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Detailed information on CNT30116534


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XLR1|PIP26_ORYSJ, E-value = 2e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693215Oryza nivaraOryza sativa87.9659.65100380forward
CNT30520501Oryza nivaraSetaria italica28.475.1294.31123forward
CNT30629601Oryza nivaraVigna unguiculata20.3719.5184.0988forward
CNT30289517Oryza nivaraTriticum aestivum63.1949.3789.38273forward
CNT30225926Oryza nivaraHordeum vulgare27.3117.3890.68118forward
CNT30387764Oryza nivaraTriticum turgidum63.1930.7889.38273forward
CNT30553402Oryza nivaraOryza glaberrima87.9672.66100380forward
CNT30436608Oryza nivaraAegilops tauschii75.4645.3488.96326forward
CNT30657898Oryza nivaraTriticum dicoccoides63.1937.3588.64273forward
CNT30228928Oryza nivaraAnanas comosus24.3126.9292.38105forward
CNT30653715Oryza nivaraRosa chinensis31.2523.1685.93135forward
CNT30214941Oryza nivaraHelianthus annuus17.8230.284.4277forward
CNT30680357Oryza nivaraTriticum urartu35.1953.5287.5152forward
CNT30596194Oryza nivaraOryza meridionalis87.2786.6799.2377forward
CNT30370054Oryza nivaraOryza glumipatula87.9672.6699.21380forward
CNT30109688Oryza nivaraOryza longistaminata85.4269.62100369forward
CNT30331328Oryza nivaraDioscorea rotundata63.1953.2281.32273forward
CNT30101372Oryza nivaraOryza rufipogon87.9650.4100380forward
CNT30576241Oryza nivaraOryza barthii87.9657.32100380forward

Expression of CNT30116534

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MPPKAQAMPRVPTPPHWSADDCTLYPMTVATVMYRNRSVAMNSAMSAR*

>peptide 2 (58 aa)
RDVGVAGIALWVGGGEDGVDEDEDHATEGPGDAEGADAAALVGGRLHLVPNDGGDGDV*

>peptide 3 (51 aa)
PGRGSRGHCALGRWRRRRCRRGRRSCHRRPRRCRGCRRRRTGRRTTAPCTQ*

Sequence

>CNT30116534
ACCGGGACGTGGGAGTCGCGGGCATTGCGCTTTGGGTCGGTGGCGGAGAAGACGGTGTAGACGAGGACGAAGATCATGCCACCGAAGGCCCAGGCGATGC
CGAGGGTGCCGACGCCGCCGCACTGGTCGGCGGACGACTGCACCTTGTACCCAATGACGGTGGCGACGGTGATGTATAGGAACAGGAGCGTGGCGATGAA
CTCCGCAATGAGCGCCCGGTAGAAGGACCACAGCCGGAGCTCGCCGACGTCGAACAGCGGCGCCGGCGGCGGGTCGGTGTAGTCCTTGGGCCGCACGTGC
TCCGGCTCCTCGCTCACCTCCTTCGACATTGCCGCTCCCTTCAGCAAGCTCAACACGCTACTCACTCTGAGCTAGCTTAGCTCTGCTCTCTCTTCTCTAC
CTCTCTCTTCTCTGATGGATGTGGAGAGGAGG