Detailed information on CNT30116531


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555137Oryza nivaraOryza glaberrima7.8524.390.38104forward
CNT30370044Oryza nivaraOryza glumipatula31.3227.5999.28415forward

Expression of CNT30116531

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MLILLLELFMNVTLFLKFSMSLHALFHFHISGD*

>peptide 2 (33 aa)
MHYFIFISRGIRRSQPSEVHITNSKNYLKQVMM*

>peptide 3 (36 aa)
MKVHGYLRGTIRGARSKFLGPGQNDSFAINFLDILH*

>peptide 4 (47 aa)
MTTTLGSWWPLAPRLASPIAAPVGCSPSRYACVDFDSVPPSDPPLFI*

>peptide 5 (86 aa)
GNPTPLGVGAPALLWGFSLSLSSSTKSTTTTTRSVASDQIQRKIHHRLPPLAAVVVFASFSRSPPSLRLDRIAPIAVSSSMASAPP*

>peptide 6 (89 aa)
ETPPHLASGRLLCFGGSLSLSLHLQRAPPPPHAPSHPTKSSAKSIIASPPSRRSSSSRRSLGAPPRLDWIGSRQSRSRPPWHLPPLRFP*

>peptide 7 (59 aa)
MLALILILCRLATRLSSSRVQPSSRLLSCCKWRRQARDSNCISCKKIVSLIITIAKLFC*

>peptide 8 (66 aa)
KPHPTWRRGACFALGVLSLSLFIYKEHHHHHTLRRIRPNPAQNPSSPPPPRGGRRLRVVLSEPPLA*

Sequence

>CNT30116531
GGAAACCCCACCCCACTTGGCGTCGGGGCGCCTGCTTTGCTTTGGGGGTTCTCTCTCTCTCTCTCTTCATCTACAAAGAGCACCACCACCACCACACGCT
CCGTCGCATCCGACCAAATCCAGCGCAAAATCCATCATCGCCTCCCCCCCCTCGCGGCGGTCGTCGTCTTCGCGTCGTTCTCTCGGAGCCCCCCCTCGCT
TAGATTGGATAGGATCGCGCCAATCGCGGTCTCGTCCTCCATGGCATCTGCCCCCCCTTAGATTTCCGTAGGAGGTAGCTAGCTAGCTTGCTGCCGCCCG
TCGCATGACCACGACCCTCGGATCGTGGTGGCCGTTGGCTCCCCGATTAGCTTCTCCCATTGCCGCTCCTGTAGGCTGTAGCCCCAGCCGATATGCTTGC
GTTGATTTTGATTCTGTGCCGCCTAGCGACCCGCCTCTCTTCATCTAGGGTTCAACCTTCGAGCCGGCTTCTCAGTTGCTGCAAGTGGAGGCGGCAAGCT
AGAGACAGCAACTGCATATCTTGCAAGAAAATCGTAAGTCTTATTATTACTATCGCTAAATTATTTTGCTAGTGTAGTTAATCACCAAAACATTATCTTC
TCTACCCCACACACTATTAAAACATGATTAATTCACTCCCTTTGACACTTGTCTCCTTGTAGATGCCATCATACTCTACTCGCTCCGTCCCAAAATATAA
GCATTTTTAGCTATGAATGTGGACAACCTTGTGTCCAGATTCATAGCCAAAAGTTATATTTTGGGACAGAGGTAGTATGTTAATATTATTATTGGAACTG
TTCATGAATGTTACTTTATTTTTGAAATTTTCCATGTCTTTGCATGCATTATTTCATTTTCATATCTCGGGGGATTAGGCGCTCCCAACCTAGTGAAGTA
CACATTACAAATTCCAAGAATTATTTGAAACAAGTTATGATGTAATTATTACCCAAGGTCTCGTGCCTAGTATAAAATAGTTTTTCTGATATACATAACT
AATAATCATTCTATCCGGTGGTATAAGTTAGTAACATGAAAGTGCATGGGTATTTAAGAGGCACAATTAGAGGTGCAAGGTCCAAGTTCTTGGGTCCAGG
ACAAAATGATTCTTTCGCTATAAACTTTCTGGACATATTACATTGATGTGCTTCTGATTATTTTATGTGTATAAAGTTTTGCTAAAGGTACTATTTGCGA
GCATTTCTTAGAACAGAAAGAAAAGTTTTAGTGAGCACATGTCTAAAATTATTAAGAAAGATTGAACGCTGATACCCAGTGGCGAAGCCAGGATCTAAGT
ATGAGGGGGCCCAGCTTTATAAGTG