Detailed information on CNT30116529


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJ52|NHL10_ARATH, E-value = 3e-16

BLAST vs NONCODE:
NONORUT004848, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673480Oryza nivaraSetaria viridis28.1155.6687.54305forward
CNT30462560Oryza nivaraSaccharum spontaneum27.3736.5882.49297forward
CNT30101505Oryza nivaraOryza rufipogon69.6866.43100756forward

Expression of CNT30116529

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MRSGTNHRNQNQTLQSVRWNAGALGADAGTVMGQLILALGPGTLKAQTLTLSLALSLTSMSNLPAVCCDLKLAAVMSPWSGCWPLKAGESLVDASVDW*

>peptide 2 (68 aa)
MRARTPRVTRREMRMLQRQLKRPHARHLHGQHRHDTARLAEPIAASYLVAPLPRSATERERERERGGN*

>peptide 3 (30 aa)
MYSNIRRANPSSTNRKKQKNPSVHTGSSAG*

>peptide 4 (41 aa)
MPRWTGRRSRGGRSRSAGRRRGRGTRRCRSRGRRACWGCGR*

Sequence

>CNT30116529
TCGTAATAAGTGGCACAACTCAGAATCAACCAAGGAATCATAATAGATGTCACTCATAGAAGTAATAGGTGATCCTGAATAAAATCTCTGAATGTATCAA
CCAACATATAGTCATATATGATCTGAACAGCAGTAAGTAAGCCGTACCCAAAAGAAAGGGGAAAAAACTAAGAAGAACAAGACATGGATCGATAATATGT
GCATGACAAGCGCTAGCTACAAGGGCTAGAAGATATGTAACCACCTAAACCACAGCGATGTACAGCAACATCCGGCGAGCTAATCCCTCATCAACAAATC
GAAAGAAACAAAAGAATCCATCCGTCCATACTGGAAGCAGTGCTGGCTAATAGTAATCCCCAAATGCGAAGCGGAACCAACCATCGAAATCAGAACCAGA
CTTTGCAGTCGGTGCGCTGGAATGCGGGGGCGTTGGGGGCGGACGCTGGGACGGTGATGGGGCAGCTGATCTTGGCCTTGGGTCCGGGAACCTTGAAGGC
CCAGACCTTGACCCTGAGCTTGGCGTTGAGCTTGACCTCGATGTCGAACTTGCCGGCGGTCTGCTGCGACCTGAAGTTGGCGGCGGTGATGTCGCCTTGG
AGCGGCTGCTGGCCCTTGAAGGCGGGGGAGAGCTTGGTGGATGCCTCGGTGGACTGGTAGAAGGAGTCGAGGGGGGCGTAGCCGAAGCGCTGGCCGTCGA
AGAGGGCGAGGGACTCGACGTTGTCGTAGTAGAGGCCGACGCGCTTGTTGGGGTTGCGGACGGTGAGGTAGAAGATGAGGGCGAGGACGCCGAGGGTGAC
GAGGAGGGAGATGAGGATGCTGCAGAGGCAGCTGAAGAGGCCGCACGCCAGGCACTTGCACGGGCAGCACAGGCACGACACCGCGCGGCTCGCCGAACCC
ATCGCCGCCTCCTACCTTGTTGCCCCCTTGCCGAGATCTGCGACGGAGAGAGAGAGAGAGAGAGAGAGAGGGGGGAATTGAACAAGTGGAGGAGGAGGAG
ACGATGCGGGTTTGTGGTTTGTGTACGTGTTTGTGGTGGATCGGGTGGGTTATAAGTACTCCAGGTCGGGGTCGCAACGACGCGT