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Detailed information on CNT30116518

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30597068	Oryza nivara	Oryza meridionalis	47.63	81.35	96.35	301	forward
CNT30371181	Oryza nivara	Oryza glumipatula	62.66	86.27	99.24	396	forward
CNT30111579	Oryza nivara	Oryza longistaminata	34.34	80.67	100	217	forward
CNT30103759	Oryza nivara	Oryza rufipogon	51.74	70.47	98.78	327	forward
CNT30577981	Oryza nivara	Oryza barthii	73.26	11.57	98.7	463	forward

Expression of CNT30116518

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MLNLILESRALCSSIALFAKIMTFQFVINYL*

>peptide 2 (29 aa)
MNCKLQMLCCRYELQAYRKGCALWAKKSH*

Sequence

>CNT30116518
TCGTTACCGTTTTGGCATAGATTTTGTTCCTTAGGCTACCTTTTAGTTTGATCTTGAAGGTTTTGGTTCCATATACATAAATTTTGCTTATGGTTCAAAA
CTTTTAAGGAGATGTTGTAAACTTGTAATCAGGAAAGTGAAGCATCTAAGTTAGATGAGGATTGTTGTACCTTGGCCATGAAATGATTGAGAGAGCCCTA
TCCAGTTCTGTTGAGAGCCTCACAGTGTTTGATGAATTGCAAGCTACAAATGCTTTGCTGTAGATATGAATTGCAAGCTTACAGAAAAGGTTGTGCACTG
TGGGCTAAAAAGTCCCATTAACCAGGAAGCTTGAAGGATACTAATATTAGTAATTCCACAAATGACACAATAGATATGCTACAACTTTGGCTCTACTTAC
ACTATCCTGTATATGACTACAAAACTGCAGCTGTGGGAAGATAGAATGTCATTACTTCAAGGGATGTGATGCGATGCTGAATCTAATATTGGAAAGTCGA
GCCCTTTGTTCTTCAATTGCCCTATTTGCAAAGATTATGACCTTTCAATTTGTCATCAATTATTTATGACACCAATGCATTCTCTTGGTGTATGCACCAA
AGCAATTTGTACGCGGAATTACTTATATCTTT