CANTATAdb - search

Detailed information on CNT30116510

BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XSQ9|PIP12_ORYSJ, E-value = 3e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30148622	Oryza nivara	Brachypodium distachyon	14.69	46.31	90.27	113	forward

Expression of CNT30116510

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MAARAAPMKGALVRDSFLARKRPKVTAGLMWPPEMPAVQ*

Sequence

>CNT30116510
TTGATGTTAAGGTTTTGTGGATAGCCGTGTTGGCAATTGCAGAAAGATGGCAGCTGAACCGAACTCCAATAGGAGGAGGATAGCTTAATTTGCACATAGT
AAAAGAGGGATACACAACTGAGTACTGAAATTACAAGTCTGTGTTCAGATAAAAACAGTAGTACAACAAACTTGAAGAGGAACGTCGACTCCACAATAAT
TTACTAACAAAGCAGGCAGCGGGAAACAGCCGCGCCCATCAGAAACAGCTTGCTCTGGATTGGCATCTTGACAGTGATAATAGCTGATGCAGGTTACGAC
CTGCTCTTGAATGGAATTGCCCTGATGACCACCTGGTGGTAGATGGCAGCAAGGGCAGCGCCAATGAAGGGGGCCCTGGTGAGGGACAGCTTCCTGGCGA
GGAAGAGGCCGAAGGTGACGGCCGGGTTGATGTGGCCGCCGGAGATGCCGGCGGTGCAGTAGACGAGGGCGAAGATCATGCCGCCGAAGGACCAGGCGAT
GCCCTGGATGCCGACGGTGGCGCACTTGGAGGTGGCCATGAACTCGGCGATCCCTGCGCGGTAGAAGGACCACGACTTGAGCTCCCCTGGCTCGAACAGC
GGCGCCGGCGGCGGCTCCTTGTAGTCCTTGTCGTCGGAGCCCTGCGCCGCCGTGCCGATCGGCTGCCTCTCCGAGAACTTGTTGGCTCCCAGCCGGACAT
CCTCCTCCTTCCCCTCCATCTCTCTACTTTCTCTCTACTGCTTCTGCTGCTGGCTTCGCTCGCTCGAGC