Detailed information on CNT30116506


BLAST search results

BLAST vs Swiss-Prot:
sp|P84516|PER1_SORBI, E-value = 6e-51

BLAST vs NONCODE:
NONORUT004854, E-value = 1e-166

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673410Oryza nivaraSetaria viridis5.6236.5786.0879forward
CNT30385971Oryza nivaraTriticum turgidum12.6740.9289.89178forward
CNT30553585Oryza nivaraOryza glaberrima18.2227.2983.2256forward
CNT30101405Oryza nivaraOryza rufipogon66.3362.7698.71932forward
CNT30604027Oryza nivaraOryza punctata6.8326.5990.6296reverse complement

Expression of CNT30116506

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MSVQETVGPHAACTLARMSSTSCSARGCSELALGGIPCSELAPLK*

>peptide 2 (51 aa)
MRRAPWRGCPPPAAAPAAAASWRWAASPAPSWRHSSKPTRHSPALIPSFCH*

>peptide 3 (35 aa)
YGAGVRLINARTAVTKHTKAILARPTDRAQKGQTY*

>peptide 4 (44 aa)
MDVTNCVKKAALSCANRLTMAAVWGSRMSAMSEVNTPCFLVSAM*

>peptide 5 (81 aa)
MRPAARAISRWSAACTAERTMESTCDCEHATTSMKSTDGSAAAAGGEERRTAAATMEASCRTANAPAVAAILSFNLQCTYS*

>peptide 6 (95 aa)
MGVTTSRSCFVLGLALQLAAIFREKASSTGLTKAHFDFPTVWPPESATRSAASPMPLLPNRSMRAWTLEVPGPGSWLTRRSGAGARLSSWPRGTG*

Sequence

>CNT30116506
TACGGTGCGGGAGTACGTCTTATTAACGCGCGCACGGCCGTAACGAAACATACAAAGGCCATACTGGCGAGACCGACCGACCGGGCCCAAAAGGGGCAGA
CGTACTAGGTCACACATACAACGGCATAATGATGTCGACCCTAGATATTCATCTCGATGAGCGACATGACATGAATTAAGCAGAGGCAGCGAAGCCCTCC
ACGACGTCCACGAGGCGTGCTCCGCTGTTGGTCTTGAAGCAGTTGCGGCGGATCTCGCCTTTGTTCCCGCCGGGCCTCGGCACCTTGCTCAGCTTGACGA
TGGACGTAACGAACTGCGTGAAGAAGGCGGCCTTGTCCTGCGCGAACCGCCTGACGATGGCCGCAGTTTGGGGGTCCAGGATGAGCGCCATGTCGGAGGT
GAACACCCCCTGCTTCCTGGTGAGCGCTATGTAGTAGCCGTTGTCGAAGGTGATGGGGGTGACGACGTCCAGGTCCTGCTTCGTGTTGGGGTTGGCGCTG
CAGTTGGCGGCCATCTTCCGGGAGAAGGCGTCGTCCACGGGCCTCACGAAGGCGCACTTTGACTTCCCCACGGTGTGGCCGCCGGAGAGCGCCACCAGGT
CGGCGGCGTCTCCCATGCCCCTGCTCCCGAACAGGTCGATGAGAGCCTGGACGCTGGAGGTGCCCGGGCCCGGGAGCTGGTTGACGAGGCGCAGCGGGGC
CGGGGCGAGGCTGTCGAGCTGGCCGAGGGGAACGGGGTAGGTGGGCCCGCCGGAGAGGACGACGGCCGCGCGGGTGGCCAGCGCGGAGATGTCGGTGCAG
GAGACGGTGGGCCCGCATGCGGCGTGCACCTTGGCGCGGATGTCCTCCACCAGCTGCAGCGCCCGCGGCTGCAGCGAGTTGGCGTTGGGCGGCATCCCCT
GCTCCGAGTTGGCGCCACTCAAGTAAACCGACGCGTCACAGCCCTGCATTAATTCCATCATTTTGCCATTAGTATAGTACGTACACGATCGTTTTTGCTT
GAATTAAACATTCATTCAATTAGATGGTTGGTTGGTTTAGTTCATAAAAAGGTAGAGTATATATAGTAGCAAGTGCCTGCGGGAAGCAGTCGTGGAAGAA
GATACGGATGAGGCCGGCGGCGAGGGCGATCTCACGCTGGAGCGCCGCCTGCACGGCTGAGCGCACGATGGAGTCCACCTGCGACTGCGAGCACGCCACC
ACGTCAATGAAGTCCACAGACGGCTCAGCAGCAGCCGCAGGTGGGGAGGAGAGGAGGACGGCAGCGGCGACGATGGAGGCGAGCTGCAGGACGGCCAATG
CGCCCGCTGTTGCGGCCATCTTGAGCTTTAATTTGCAGTGTACGTACTCGTAGAGTCGTAGTGGCCGGCCGGAGTTGTGGACTACTCTCCTCAGTCCGCT
TTGCT