Detailed information on CNT30116505


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LDE4|ERF83_ARATH, E-value = 3e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693243Oryza nivaraOryza sativa47.7519.47100350forward
CNT30515949Oryza nivaraJuglans regia21.968.7680.75161forward
CNT30630024Oryza nivaraVigna unguiculata21.6918.5380.5159forward
CNT30585986Oryza nivaraMusa acuminata22.9224.7482.74168forward
CNT30437038Oryza nivaraAegilops tauschii26.3325.1394.82193forward
CNT30254792Oryza nivaraAvena sativa13.121.4886.4696forward
CNT30621468Oryza nivaraCajanus cajan22.517.6284.24165forward
CNT30101508Oryza nivaraOryza rufipogon13.2337.1686.697forward

Expression of CNT30116505

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MPAPPPSATATATASAAFLGAMSVLVRVEHHEQSELRRARAPSVRPVDGGWLVWRRWCV

>peptide 2 (39 aa)
FFFFSCFFPSFFKGTVTPGVVAFSSYLSPRAKRTRSMYT*

Sequence

>CNT30116505
TTCTTTTTCTTTTCTTGTTTTTTTCCTTCTTTCTTTAAAGGAACTGTAACACCGGGAGTAGTAGCCTTTTCCTCATACCTATCTCCCCGTGCAAAAAGGA
CACGATCTATGTACACCTAGTTGATCAATCCTGGCAATTAAACGGACGATTAACCTCTTACTATTACACGTCGCTCTAGACTTTTCTACGAGGGATTTGT
GGGGGGTTCTTGTCGTCGTCATCGGGCGCTGCAACCTACGCCTCCTCGATCGGCGGCGGCAGGTTCAGGTCGAGCCCCACGCCGACGGCCGGCGAGGCAC
CGGTGCCGCGACGGCCACGGTCACCGCGACCCTGGGGTCGAGGAACAGGAACGGCTGGGCGGCCACCATGGCGACGGGGAAGTTGGTCTTGGCCTTGGGC
CCGCGGAAGTGGAGCGCGGCGCTGTCGTAGGCGCGCGCCGCGGCCTCGGCGGTGTCGAAGGTGCCGAGCCACACCCGCGCCTTCCTGGCCGGGTCGCGGA
TCTCCGCCGCGTACCTGCCCCACGGGCGCTTCCTCACGCCGCGGAACCTGGGCTCCATGCCGGCTCCTCCGCCCTCCGCCACGGCGACGGCGACGGCCTC
GGCGGCGTTCCTGGGAGCCATGTCCGTTCTTGTTCGGGTCGAGCACCACGAGCAGAGCGAGCTAAGGCGGGCGAGAGCGCCAAGTGTTCGACCGGTGGAT
GGTGGGTGGTTGGTTTGGCGCCGGTGGTGCGTT