Detailed information on CNT30116475


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LI74|CHUP1_ARATH, E-value = 7e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673517Oryza nivaraSetaria viridis28.966.2685.71161forward
CNT30555389Oryza nivaraOryza glaberrima103.5982.995.32577forward
CNT30138306Oryza nivaraLolium perenne35.1931.5185.71196forward
CNT3012274Oryza nivaraZea mays40.3930.9183.11225forward
CNT30353380Oryza nivaraEragrostis tef21.7221.0186.78121forward
CNT30367618Oryza nivaraSorghum bicolor40.3931.6982.22225forward

Expression of CNT30116475

Peptides detected in this lncRNA

>peptide 1 (30 aa)
PIMLLLTSKTLDVVDPREVVSFLASRFMRL*

Sequence

>CNT30116475
CTCCAATCATGTTGCTTCTCACATCAAAGACACTTGATGTTGTTGATCCCAGAGAAGTTGTGTCCTTCTTGGCTTCACGCTTCATGAGACTTTGATAAAA
CTCTACAACCTCTGGAGCACGGTGTACCTTGTCACCACCAGCAAGATTCCTAGGTAGGGAACCAGGGGGTGGTGGCGGTGGTGGCAGGCCACCAGGTTTG
CCAGGAGGCGGTGGTGGAGGAGGTGGCCTAGGAACTCTTGGAGCTCTCTTCTCAATATTTGCAAGTTTCAGTTGTGTCACAACTAGAGGGTTGTTCTGGT
TATCACTAGGTTGGTCACTGGATTCANTCCTTTATTTGAGCAAGTTTTGGAGGGAGTGCAGATCTTGGAGATGGCACAATACCTGAACTGTTGACACCGC
CATATCTTTGTACCCTAGCTTTCTCGGCTTTCTCTTTTATTGCCTTCTCCCGTTCTGTGGCAAGTTTATGCCTATCTTTGTAAGCGGGATACTTGTCATC
AGCAAAACCTTGTACAGTCTTTGACATCAAATGAAATGAAGATGCAACATTTGCCTC