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Detailed information on CNT30116461


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370025Oryza nivaraOryza glumipatula79.8810099.56913forward
CNT30107111Oryza nivaraOryza longistaminata65.0993.8297.31744forward
CNT30576114Oryza nivaraOryza barthii89.1591.899.511019forward

Expression of CNT30116461

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MGDWEPALLDVSLALILSPASAIYSANQVQEVLKFFDDTHVADLL*

>peptide 2 (66 aa)
SIAAQEAVYRSPMKDLGFGGSHPPDFLSRSGAGGVVRRGRMQVVVGTARGEVERRRRASSSLFSSP*

>peptide 3 (35 aa)
MGFFIAKFCGGFRVIVAPFFSTIYSMKLTHRCQFI*

>peptide 4 (31 aa)
MSLSPSSYRPRQRYIVPTRSRKFLSSLMIPM*

Sequence

>CNT30116461
TCTATCGCAGCCCAGGAGGCCGTCTATCGCAGCCCAATGAAGGATTTAGGGTTCGGTGGGTCTCATCCTCCTGACTTCCTGAGTCGGAGCGGCGCCGGCG
GCGTAGTGCGGCGCGGTCGCATGCAGGTGGTGGTAGGGACAGCGCGCGGCGAGGTGGAGCGTCGGCGTCGTGCATCCTCTTCACTCTTCAGCTCACCATG
AATAGCATCCACCGTCTCCCCCCATCGACCAGCTGCTGGCAACATACGTTTCTATCAGCAGCTAGCTGTCCTAGCTAGCCTCATCAGTTCAGCGCATCGA
TGGGAGATTGGGAGCCGGCACTGCTCGATGTCTCTCTCGCCCTCATCTTATCGCCCGCGTCAGCGATATATAGTGCCAACCAGGTCCAGGAAGTTCTTAA
GTTCTTTGATGATACCCATGTAGCTGACCTTCTTTGATGATACTTTGTTCCCATATCTGATTGGTTGATATACATTGCAATGTGTAGGCACCAAACAAAG
CAGTTGTTGTGTTCCTTTGCATAGAGATTTTTACATCATCTCTGATATGTCTCATGTTTCTGTTAATTATCTCCTATCCCAGTCCACTTTCATGGGCTTT
AAAGCTGCACTGCCAGTAAATTGAGGTGGTAAGCAGCCATCGAATCATCCGCTCCTAAAATTCTAAGCATTCGTGAGTTCCTTGATGATCCCTGTTTGTT
TCCTGTTGATTACAAGTTAATAGATGCTACACTAAGACCTTGACTTTGCAACCTTCAGTCTCTAATTGTCTGCATGTATCATTTACTCCAGAGTTCTAAT
TAACAGGATTTTCAGGTGAAGGCCATCTGTGGATCCAAAATATATTGTTCTTTGGCTAAGATTTTAGGTCTGGCTGTTTTTCTCCATTTCATATAAGCTT
TTTGAAAATATCCCATATTAAATATTTCTATTTGAGAAACTATCTGGATACTTTGATTAACCCCCATTAGATGGGTTTTTTTATAGCGAAATTTTGTGGC
GGGTTTCGTGTAATTGTTGCCCCTTTTTTTTCCACTATATATTCAATGAAATTGACACACCGGTGCCAGTTCATTTAAAAAAAAATCTGTGACGGGTTTT
ATACTTTACATATTTTCTGTTGCAGATGAGCTGAAAAACTCTT