Detailed information on CNT30116420


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004213, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690346Oryza nivaraOryza sativa22.3655.9295.98373forward

Expression of CNT30116420

Peptides detected in this lncRNA

>peptide 1 (53 aa)
SRSTIGAPAPLLSLSLSLSLLLHGKKKRRKKITGGRRRKRKRKRKTDRWAPAQ*

>peptide 2 (68 aa)
MDFIEIGSSSSSVEFIIFWRQPVVFRGSDNQVAYLGFIRVGARQVIIPPLEHNDPIFCIFDILCISHT*

>peptide 3 (38 aa)
MGTLAVYYPRRRTVGCKARQNLNPRSKCCSWHPTPRCV*

>peptide 4 (32 aa)
EAVPPSEHRRPFSLSLSLSLCCYTGRRREGRR*

>peptide 5 (46 aa)
KPFHHRSTGAPSLSLSLSLSVVTREEEEKEEDNGRKKKEKKKKKKD*

>peptide 6 (44 aa)
MRIVVEASLFPRPPQHAVQLALGLCVILAALPPLTVVGVTLPSH*

>peptide 7 (30 aa)
MKPQPACYPNSIPTIYPSTTHSLCMKYEPI*

Sequence

>CNT30116420
GAAGCCGTTCCACCATCGGAGCACCGGCGCCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTGTTACACGGGAAGAAGAAGAGAAGGAAGAAGATAAC
GGGAGGAAGAAGAAGGAAAAGAAAAAGAAAAAGAAAGACTGACAGGTGGGCCCCTGCACAGTAACATTTTATATTTTCCTTATTTAATTCAAAATCCAAT
CTTTAGAAGCTCATATCTCCTAAACCGTAGATCCGATTCTAGTGAAACTTATACCTAAATTCATCTAAATTAAAACCCTACCTTTTGACACCAAATTTTC
TATTTTAATATTTTATTTGAATTTATTCAAATACTGTTTGAATTTATGTTTGTCTTTTCAAATATTTCTTTTTAACCCAAAATACCCTTTAGCCACTAAA
AAGCCGCCAGTTGGAACTTTACGCCTTCCATGGGGACGCTCGCGGTTTACTATCCCCGACGTCGGACCGTTGGTTGTAAAGCCCGGCAAAACCTAAACCC
AAGGTCGAAGTGTTGTTCCTGGCACCCCACGCCTCGATGCGTATAGTGGTCGAAGCTTCACTATTCCCTCGACCTCCACAGCACGCCGTACAGTTAGCTC
TTGGGCTCTGTGTGATCCTAGCCGCTCTGCCGCCACTCACGGTTGTCGGAGTAACACTTCCGTCCCACTAAACCCACACAAACCTCCTATCCCTCTAGCC
GTTATGCTGTCTGTTGACACCGGCTAGAGAAGATACCAATTCTAGTCGTTATACTGCCCAACTCTAGCAACGACTAGCAAACACCCAAATCCCAGCCGAT
ATTCATCCTACCTCGATATCGGCTTAATCAAATGAAACCCCAGCCAGCCTGCTATCCAAATTCCATACCAACCATTTACCCTTCTACTACCCATAGTCTA
TGCATGAAATACGAGCCGATATAGTATTCTATTTCAGCATCGACTCGAGAACAACTAAATCCTAGCCATTCTTCTACCAAAGCCCAACCTCGACCAATAC
TAGCCACATATCCACTTAACCAATTAGATTATTTAGTATATCCCCTACTCTCCAAGAAACTAAAACCCACACATAAAATGTTAGCCCAATAATCCCTATC
CTATAAAGGAGATATTATACCCTAAACCCTAGCTCTCTTAGCCGCCTATCGATCCTTTGTTATTTTATGGATTTTATTGAAATTGGCTCTTCCTCTTCTT
CAGTAGAGTTTATTATATTTTGGAGGCAACCTGTGGTGTTTCGAGGATCGGATAATCAGGTTGCCTACCTTGGATTTATTCGCGTTGGAGCAAGGCAAGT
TATTATTCCTCCCCTTGAACATAATGATCCTATATTCTGTATCTTTGATATTCTATGCATTAGTCATACATAATTTTGAATGCATAACCTGAATATAGCA
AACCAGATATGCTAGCTTTGCTTAGCCCTGCCTAGTTAGTCTGCATAAAAATATAATGAACTTAGATTGGGACAGTACGTAGGAATTGGTTGATTTCCGG
GTGGCTAGTATTGTCTCAGTCGATATAGTTATTACCAAGTACTTATGTCAAACGAACAAGTACGACCGCAATTCTAGAATGGGGACAGACCTTGCAAAGT
AGGTTATCTAGCAAAGGTGGTACCTCTGTACAGTGGTTCTTATTTAAGTCCTCGCGCAGGAGGCAAAC