Detailed information on CNT30116419


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370061Oryza nivaraOryza glumipatula90.6764.1399.311448forward
CNT30101490Oryza nivaraOryza rufipogon96.7491.5899.551545forward
CNT30575998Oryza nivaraOryza barthii19.4740.03100311forward

Expression of CNT30116419

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MTAMEIDVNVGEGIMFIEGHTSCDQQNMFRDAKVRDMCTV*

>peptide 2 (39 aa)
MEFLGLVWCPLSHKLSEIATVEKFLSLISDVQDIHIYNF*

>peptide 3 (49 aa)
ALSLFRSLSLSCSLSHSLQREGERSIVWIDFLPLDSTDENFYKYHIWCQ*

>peptide 4 (46 aa)
MYSSMFFYWLHLCGCQLQYMFSIRKLPTKNISLEAFEWLILNLVSF*

>peptide 5 (35 aa)
MCLIYFFLLVSNVGLVLYCFFFLLSLFLLVEYRLT*

>peptide 6 (31 aa)
MCKIFISIIFRCVHMTFSFFWSIVLCQLFSV*

>peptide 7 (38 aa)
RALSLSFTLAFLFSLSFSPARGREIHRLDRFSPPGFNR*

>peptide 8 (38 aa)
MVPMTDEIFNKDQIWCIIIVFMRNYSVMFDEIFYEDQI*

>peptide 9 (51 aa)
RSLSFVHSRFLVLSLILSSERERDPSFGSIFSPWIQPMKISTNIIYGANDR*

>peptide 10 (59 aa)
MSTWVKGSCSLKDILVVINRICLGMQKLEICALYDVCSSGALCFPLFQYETYSLLEGSF*

>peptide 11 (63 aa)
MCPHDIFIFLVYCSLSIVLCVILTGLYVYFLATLFWLLLLLHVLILGARALELLGLWDDSNGN*

Sequence

>CNT30116419
CGCGCTCTCTCTCTTTCGTTCACTCTCGCTTTCTTGTTCTCTCTCTCATTCTCTCCAGCGAGAGGGAGAGAGATCCATCGTTTGGATCGATTTTCTCCCC
CTGGATTCAACCGATGAAAATTTCTACAAATATCATATATGGTGCCAATGACAGATGAAATTTTCAACAAAGATCAGATATGGTGCATAATAATAGTTTT
CATGAGAAACTACAGTGTTATGTTTGATGAAATTTTCTATGAAGATCAGATATGATGCACAATAATAGATTCTGCTTTGTTTTTGCTTAACAAGTGCTGC
CCGGGACATAACTCTTATGTGTCTACTTATTCCTTTCATTAAAACAGAAAAGGAGAACTAGCCAGGTAAATTCTATGATCGTCAAACTTTTTCTTGCAGA
AAAATTTATGGATGTATAGCTCCATGTTTTTTTATTGGTTGCATTTATGTGGATGTCAGCTTCAATATATGTTTTCTATTAGGAAATTACCCACAAAAAA
TATATCTCTTGAGGCATTTGAATGGCTGATCTTAAACCTTGTATCTTTTTGATTTAGTTATGGTATTTGATGCCCACTTCTTTCATCTGGGGATTTAGTT
TAGTTTTCAAATTGTATTTTCAGTTTTGAATCTTTGATTTAACAGATGAAGTCAATATTTTAGGTTTCATGCGGTCCTAAAACACACTTACAGTGCAACT
CACACCACTTACAGTGGAAATATACCTTAGTTACAGTTGTAATTTTTATTATTTCGCACTGTAACTGACTATTGGTAGTTAAATTGTTAATTATTGATAT
TGGTTTTATCAGAGACTTGTAGTTTGGGGAACCCTAGGCATCTTTATTTTCTTAGATATGTGCCTGATATATTTTTTTTTGCTAGTTAGTAATGTAGGCC
TAGTTTTGTACTGTTTTTTTTTTCTGTTATCTCTATTTCTCTTGGTAGAATATAGATTGACCTGAGGCTTCTTCCTTGATAGAAGCTTGACATACTGTCT
CTAGTTTACTTCCATTGCTTAGCATGGAATTTTTAGGTTTAGTGTGGTGCCCGTTATCTCACAAGTTATCTGAGATAGCAACTGTTGAGAAATTTTTGTC
TCTAATTTCAGATGTGCAAGATATTCATATCTATAATTTTTAGATGTGTCCACATGACATTTTCATTTTTTTGGTCTATTGTTCTCTGTCAATTGTTCTC
TGTGTGATATTGACTGGGTTATATGTGTACTTTTTAGCAACTTTGTTTTGGCTTTTGTTGCTCTTGCATGTGTTGATTCTGGGAGCAAGGGCCTTGGAGC
TGCTTGGATTGTGGGATGACAGCAATGGAAATTGATGTCAACGTGGGTGAAGGGATCATGTTCATTGAAGGACATACTAGTTGTGATCAACAGAATATGT
TTAGGGATGCAAAAGTTAGAGATATGTGCACTGTATGATGTATGTTCTTCTGGTGCCCTATGTTTCCCCTTATTTCAATATGAAACTTATAGCTTATTAG
AAGGATCTTTTTGAATCAAAAGTCATGTTTCCCTACTCAGTACTGCTTGATGTAAAGGAATCCAAAATTTCATGCAATTTCCCTAAGAGTTTTCAAA