Detailed information on CNT30116414


BLAST search results

BLAST vs Swiss-Prot:
sp|P29402|CALX1_ARATH, E-value = 9e-32

BLAST vs NONCODE:
NONZMAT001268, E-value = 5e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676366Oryza nivaraSetaria viridis48.9335.0489.78137forward
CNT30517641Oryza nivaraJuglans regia63.5733.0982.58178forward
CNT30377662Oryza nivaraArabidopsis thaliana25.367.8585.9271forward
CNT30278532Oryza nivaraChenopodium quinoa43.2111.0187.6121forward
CNT30728459Oryza nivaraCorchorus capsularis3515.8185.7198forward
CNT30629341Oryza nivaraVigna unguiculata59.6415.2982.04167forward
CNT30709122Oryza nivaraGlycine max36.4328.9885.29102forward
CNT30164689Oryza nivaraPistacia vera2512.7388.5770forward
CNT30190468Oryza nivaraSecale cereale63.5718.4187.08178forward
CNT30395817Oryza nivaraTriticum turgidum63.5723.0387.08178forward
CNT30561418Oryza nivaraActinidia chinensis30.718.5384.8886forward
CNT30238817Oryza nivaraBrassica oleracea2513.139070forward
CNT30144801Oryza nivaraMedicago truncatula45.7122.1585.94128forward
CNT30264134Oryza nivaraBrassica rapa23.937.7389.5567forward
CNT30605054Oryza nivaraGossypium raimondii37.518.5283.81105forward
CNT30686114Oryza nivaraTriticum urartu63.5729.7787.08178forward
CNT30349705Oryza nivaraEragrostis tef63.9325.5388.27179forward
CNT30366134Oryza nivaraSorghum bicolor37.516.6495.24105forward
CNT30120413Oryza nivaraCitrus clementina258.659070forward
CNT3038556Oryza nivaraCucumis melo28.5710.1386.2580forward
CNT30149228Oryza nivaraBrachypodium distachyon62.536.8485.71175forward
CNT30101562Oryza nivaraOryza rufipogon38.5712.5100108forward
CNT30585446Oryza nivaraEchinochloa crusgalli24.6422.8594.269forward
CNT30601898Oryza nivaraGaldieria sulphuraria18.2121.0788.2451forward
CNT30725707Oryza nivaraLupinus angustifolius22.8611.6290.6264forward

Expression of CNT30116414

Peptides detected in this lncRNA

>peptide 1 (91 aa)
HLGLSIFGASHSPSSSSSQSSGLLASGSSISSGSSSSHPSGFVASSSSISMGASSSQSSGSGMVLDGISDGSKSSAERKFAFFFSSPSTKIL

>peptide 2 (69 aa)
TLGVVNLWCFPFSILLIIPVFRLVSLRIINFLWLIIQPPLWLCGLFVLNFHGGILIPVIRIRNGLGWDK*

Sequence

>CNT30116414
CACACTTGGGGTTGTCAATCTTTGGTGCTTCCCATTCTCCATCCTCCTCATCATCCCAGTCTTCAGGCTTGTTAGCCTCCGGATCATCAATTTCCTCTGG
CTCATCATCCAGCCACCCCTCTGGCTTTGTGGCCTCTTCGTCCTCAATTTCCATGGGGGCATCCTCATCCCAGTCATCAGGATCAGGAATGGTCTTGGAT
GGGATAAGTGATGGCTCAAAATCATCAGCAGAAAGGAAGTTTGCCTTCTTCTTCTCTTCCCCATCAACCAAAATTCTCAC