Detailed information on CNT30116403


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201938Oryza nivaraPisum sativum23.455.2596.2353reverse complement
CNT30492211Oryza nivaraOlea europaea42.4819.7984.3896forward
CNT30633047Oryza nivaraCapsicum annuum39.826.6486.6790forward
CNT30188310Oryza nivaraSecale cereale52.6515.0196.64119reverse complement
CNT30220912Oryza nivaraHordeum vulgare53.9823.2895.9122reverse complement
CNT30556052Oryza nivaraOryza glaberrima38.534.9410087forward
CNT30956Oryza nivaraZea mays26.5516.719560forward

Expression of CNT30116403

Peptides detected in this lncRNA

>peptide 1 (59 aa)
TKKQTYSIRKRKERGKQKEREGFEPSIVPRTIPVFKTRAISHSAISPQPNPYFIPTNRT*

Sequence

>CNT30116403
ACCAAGAAACAAACGTATTCAATACGCAAAAGAAAAGAGAGAGGAAAGCAAAAGGAGAGAGAGGGATTCGAACCCTCAATAGTTCCTAGAACTATACCGG
TTTTCAAGACCAGAGCTATCAGCCACTCAGCCATCTCTCCACAGCCTAATCCTTATTTTATTCCTACAAATAGAACATAGCCATACGAAATGACTCACTA
ACCTCTAGAAACATCTCAAATACTCA