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Detailed information on CNT30116399


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692359Oryza nivaraOryza sativa27.313.08100190forward

Expression of CNT30116399

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MIEGDNLEEVLQELEEMNFIKTMHSTYHAIRI*

>peptide 2 (39 aa)
STSTPNGLDPNQIHGGGGRLHGAWRLIERRRARASRIVE*

>peptide 3 (56 aa)
MVTRASVIISQEGEPETDFIHWKSLRGEQHATDNNPVGLGFSTSKLTTIVRIHRRC*

>peptide 4 (34 aa)
MSLNLVFLFPIDPAWFCLIVCRIRFADVLLRGEG*

>peptide 5 (38 aa)
LHFNTKWSRSKPDPWRRGEAARRVEIDRATTSSGQSNS*

Sequence

>CNT30116399
CTCCACTTCAACACCAAATGGTCTAGATCCAAACCAGATCCATGGAGGAGGGGGGAGGCTGCACGGCGCGTGGAGATTGATAGAGCGACGACGAGCTCGG
GCCAGTCGAATAGTTGAGTGAGGAGACACAACGGTGGAGGCAGAGGCGGCTCATGAGCTTGAATCTGGTCTTCCTCTTCCCCATCGATCCTGCGTGGTTC
TGCTTGATTGTTTGCAGGATCAGATTTGCTGACGTGCTACTGCGTGGAGAGGGGTGACAGGGAGGTGACCACCAAGTGGTTCCCGCGATCAATGGTCACA
CGGGCGAGCGTGATAATCTCACAGGAGGGAGAGCCTGAAACAGATTTCATCCATTGGAAAAGCTTGAGAGGAGAGCAACATGCAACAGACAATAATCCTG
TGGGTCTGGGGTTCAGCACTTCAAAACTGACGACCATTGTGAGAATACATAGGAGGTGCTAACTAAGATGATTGAAGGTGACAATCTAGAGGAGGTGCTG
CAGGAATTGGAGGAGATGAACTTCATCAAGACAATGCATAGCACTTATCATGCTATTAGGATTTAAAAAGAAAATTCATATAAGAGTTAGTTTGTAATCA
ATTTGTCTATATACTGAAATGACAATATTACACAATGTGTAAAATGCCTCTGCTTCTTCCAACTTGACTTGCACTGCTTTTGCATCTCAATGACAG