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Detailed information on CNT30116395


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3070001Oryza nivaraQuercus suber17.7427.3483.22143forward
CNT30439764Oryza nivaraAegilops tauschii15.5126.7788.8125forward

Expression of CNT30116395

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MRQHHHPLAAPHHPHVQDLQQLRPARRRRPAPSSPSSP

>peptide 2 (39 aa)
MPSTPRRSGRRMEARMPIMAETEWPTKAQRGMRSASRLS*

>peptide 3 (62 aa)
MRVPLLGHTYRSRSCGGFFFSFVLTRRCGYAHARRAAVACGGRWISTGRERGGAPELGGWGR*

Sequence

>CNT30116395
TGCACGAAGCACTCCAGTAATGTAATTTTTTTCCAATAGAGTAAGGTAGGTAAAAATCGAGCACTAATGCTACAGTACACTCTCGGTCTTGGCAGGTCGC
GCCGAAATATTTTCTAGGCCTGAGAAGAGGAGGGTAAAAATGCAGTAAAATCCGACGCGGTAAAAAAAAAAAAAAACAGTAGAGGGATGCGTGTCCCCCT
GCTGGGCCACACGTACCGTAGCCGCAGCTGCGGTGGTTTTTTTTTCTCCTTCGTTTTGACTCGTCGCTGCGGCTACGCGCACGCGCGGCGCGCCGCGGTG
GCGTGCGGGGGGCGTTGGATTAGTACCGGGCGAGAGCGCGGCGGAGCACCTGAGCTAGGAGGCTGGGGGCGCTGAGGTAGGCGGCGACGGAGGCCGGGAC
GGAGACGTCGCGGGTGGTCTGGACGACGACGCAGGGGGCGCGGACCATGCCGAGCACGCCGCGGAGGTCAGGTCGTCGGATGGAGGCGAGGATGCCGATC
ATGGCGGAGACGGAGTGGCCGACGAAGGCGCAGCGCGGGATGCGGAGCGCGTCGAGGTTGTCGTAGCGGCGGAAGTCGAAGTGGTCCGGGTTGACGCTGC
CGGCGCAGACGAGGTCGTAGAGCACGACGCGGTGGTCGCGGGTGAGGTACGGCAGCACGCGGCTCCACGCCGACTGGTCCGTCCCGAAGCCATGCGACAG
CACCACCACCCGCTCGCCGCTCCCCACCACCCGCACGTTCAGGATCTGCAGCAGCTTCGCCCCGCTCGGCGCCGCCGACCCGCTCCCTCCTCCCCCTCCT
CCCCCG