Detailed information on CNT30116369


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005668, E-value = 3e-37

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692184Oryza nivaraOryza sativa21.8148.299.17241forward
CNT30107677Oryza nivaraOryza longistaminata15.8455.3887.43175forward
CNT30578094Oryza nivaraOryza barthii9.6832.1386.92107reverse complement

Expression of CNT30116369

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MSASFFLLFSPFLLSLSLWAGQRRGEAGEEVQQLATWRRRRHP*

>peptide 2 (36 aa)
MFQSRFDNSYDRSLSKLASIVPVSNGFRRYSTFILL*

>peptide 3 (97 aa)
MSLNVLTVFPSSVADTLLCACGEEATAAALLPPPAPCSPRRRRSPSPAPASSPPPPPCSLIPRRLRRRVARPLPPRPVDLLPTCRPGGTGLPRAKKS*

>peptide 4 (51 aa)
MQNRVATCNKLHCTHAELPTSIIAFVVSPCLDLLLVNNTSPAPHAARIDEMW

Sequence

>CNT30116369
CCTAGTTTTATCCAACGTAGTTGCTGAGGCAGCGTGAAACCCACGTGGGTCCTATATGTCAGCCTCCTTCTTTCTCCTCTTCTCTCCCTTTCTCCTCTCT
CTCTCACTCTGGGCAGGCCAGCGCCGGGGCGAGGCGGGGGAGGAGGTCCAGCAGCTGGCGACGTGGCGGCGGCGGCGGCATCCCTAGCCTGTGCAGCTTC
AACCGCGCCGACGCCGTCACGGACGACGACGAGGGCAGCAGCTGGAATTCACTGTGGACGCCATCAGGGTCACTGAGATTGGAACAGCCGTGAAACCTCT
GCGGAAGCATGTTTCAAAGCAGATTCGACAACTCGTACGATCGCTCATTGAGTAAGTTAGCATCAATTGTGCCAGTTTCCAACGGTTTCAGGCGATACAG
TACTTTCATATTGCTGTAATTTGCCCTGATTTATGTCATTGAATGTTTTGACCGTCTTCCCTTCGTCGGTCGCCGACACCCTCCTCTGCGCTTGCGGAGA
GGAGGCTACTGCCGCCGCCTTGCTCCCCCCCCCGGCGCCTTGCTCCCCTCGCCGCCGCCGAAGCCCCTCCCCTGCTCCCGCATCGTCGCCACCGCCGCCG
CCTTGCTCCCTGATCCCGCGTCGTCTCCGCCGCCGCGTCGCTAGGCCTCTCCCACCTCGCCCCGTCGATCTCCTCCCCACCTGTCGGCCCGGCGGCACCG
GCCTCCCCAGAGCAAAGAAGAGTTAGAGAGAGAAGAGGAAGGGAGAGGAGAAAAAAAAAGAGCGTGGGTCCCACGTTGACTCAGCGGCCACGTAGGATAA
AACCGGGATTAAAACCACCGAGGGATCTACTGTGACCGGTTTTGTATAGTTAAGGGACCTCGCATATCTGGTTTTACGGTTCGAGGACGTTTTTTAATCC
CGATGACAAGTTGAGGGACCTTCGGTGTACTTTTTCCTCGCACAAACGCATGCAGAATCGCGTTGCAACTTGCAACAAGTTGCATTGCACACATGCCGAA
TTGCCGACCTCGATAATCGCTTTCGTTGTTTCTCCCTGTCTGGATCTTCTGCTGGTTAATAACACGTCGCCTGCACCACATGCTGCCCGGATCGATGAGA
TGTGG