Detailed information on CNT30116368


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39176|ERLI1_ARATH, E-value = 1e-29

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552993Oryza nivaraOryza glaberrima85.8793.8697.2535forward
CNT30447822Oryza nivaraSaccharum spontaneum24.422.4584.21152forward
CNT30367039Oryza nivaraSorghum bicolor26.4828.2180165forward
CNT30369831Oryza nivaraOryza glumipatula81.8683.296.67510forward
CNT30105280Oryza nivaraOryza longistaminata85.2385.191.34531forward
CNT30100765Oryza nivaraOryza rufipogon81.3851.0697.63507forward
CNT30575695Oryza nivaraOryza barthii85.5583.9497.75533forward

Expression of CNT30116368

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MLARRAVQRHTAASRSARPWMRLQHGCRGGVPSCTFISPFSTFAHTPSFSVSIGHLPPPPPPPLPPPPPPPLPPPPEPPPPLPPPPEPP

>peptide 2 (38 aa)
VRTDAYTMRSIEYKLINQLCRYTYTSRRMKHALITSWN*

Sequence

>CNT30116368
AGTACGTACTGATGCATATACGATGAGATCCATCGAGTACAAATTAATTAATCAATTATGCAGATACACATATACAAGTAGACGAATGAAGCATGCTTTA
ATTACGTCGTGGAACTGAATCATATGCATGCATATATATCTCATTAATTTACGGGATGAAGGAGGAAATTAAGGCACGCAGATACATATGATGATTTGAA
CAAGGAACAAATTAGACATAGATAGATATATAGTTGTACGTGGCCTGGTGGTCGTTCTTCGTACGTTCTTGTGTGTAGCAAGCAGTGAAGTAGAATGGAG
CAGCAGCTATATTAGTTGCTGCACTGGAAGCCGGAGGGGACGGAGCGGCCGCAGATGTTGGCGCGGAGGGCGGTGCAGAGGCACACGGCGGCCTCAAGGT
CGGCGAGGCCCTGGATGAGGCTGCAACACGGCTGCCGCGGCGGCGTCCCCAGCTGCACGTTTATCAGCCCATTCAGCACGTTCGCGCACACCCCCAGCTT
CAGCGTGTCGATCGGGCATCTTCCTCCTCCCCCGCCGCCGCCGCTTCCTCCTCCTCCGCCGCCTCCGCTTCCTCCACCGCCTGAACCTCCGCCGCCGCTT
CCTCCTCCACCTGAACCGCCGCC