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Detailed information on CNT30116356

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003442, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692489	Oryza nivara	Oryza sativa	62.04	73.56	98.19	662	forward
CNT30553012	Oryza nivara	Oryza glaberrima	64.2	75.52	97.37	685	forward
CNT30595987	Oryza nivara	Oryza meridionalis	64.39	56.31	95.92	687	forward
CNT30369872	Oryza nivara	Oryza glumipatula	62.42	77.17	98.8	666	forward
CNT30105059	Oryza nivara	Oryza longistaminata	62.32	71.43	95.94	665	forward
CNT30101055	Oryza nivara	Oryza rufipogon	64.39	71.27	98.4	687	forward
CNT30575926	Oryza nivara	Oryza barthii	64.29	81.86	97.96	686	forward
CNT30603889	Oryza nivara	Oryza punctata	62.51	59.77	92.8	667	forward
CNT30550796	Oryza nivara	Oryza brachyantha	39.93	33.54	85.21	426	forward

Expression of CNT30116356

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MNGRSNLQWRIMDHRIGLSSRAIYDYMQSIIDAIMQVCN*

>peptide 2 (33 aa)
MSVHLYSSFAFGEVLLTEHSVLTNSCTMFVCCE*

>peptide 3 (39 aa)
MENHGPPNWAIFPSYLRLYAEYNRCNHASVQLVVFFFFF*

>peptide 4 (29 aa)
MMVLIIQFLLLILKVLCQDKKSLCKPSKP*

>peptide 5 (30 aa)
MQSCKCATSSFFFFFLKEMRLGIACNGPGV*

Sequence

>CNT30116356
AGAAACCCTTGGATTTCATGCCATCAAGCGTAACAGTGTAACCCCACCATGTCATTTCTTTGCTACTTATAGCATCCCAAGTTGATGATCCATTTCATGT
TTTCTCTCCTTTTTCAGATGCATACTATGATGTCCAATGTGGGTGTCTGAACTGAAATCTGAACTCTGAACTCTGAAGGCTGTTGTTTCCATCAGGGTGC
ATTGGTTCAGCAGAGATCGGTGATCTATGTTTTCATATGTGAGTGATTTCTGTTTTGTTTTTGAAAGGAAGCGTATATGAGTGTTCATCTATACTCTTCT
TTTGCTTTTGGTGAAGTTTTGTTAACGGAGCACTCAGTACTAACAAATTCTTGCACAATGTTTGTGTGTTGTGAATAGGCAGTTGGTCACGTTCTACCGG
TCTTTTTCGATGGAAATGAAGGTAATTGGAGGAGTTCTATCTGTTTGATGGAATTCAGAACCAAAATCCGAATTCCACAAAATGGCTAGAGGAAAATTTT
TAGGGCTATTTGCAATTCCACAACCATAAGCATGGCCAACTGGTAGTTCTCCAAGTAAAAGAAGTTAGGAGCTGGTTATGATGGTACTAATTATTCAGTT
TCTTCTATTGATCCTGAAAGTTCTATGCCAGGATAAGAAAAGCTTGTGCAAACCCTCCAAGCCATGAAAACAATTATCATCAAGAGAATTGAAGATTCTA
TTTTTTTTTCTTAGGATCTGCAGGGAAAATTATTCAGATAGTGCAACAGGTTCAAGTAGCCATTTGAAACTCAACGCAACTTTATATCAAGAACAAATGA
ACAATGAATGGTAGATCCAATCTTCAATGGAGAATCATGGACCACCGAATTGGGCTATCTTCCCGAGCTATCTACGACTATATGCAGAGTATAATAGATG
CAATCATGCAAGTGTGCAACTAGTAGTTTTTTTTTTTTTTTTCTGAAGGAGATGAGATTAGGTATAGCATGTAATGGTCCTGGTGTATAATGCCATGGCA
CACTCAACTTGCATTTAAACAACGCTAGTCCCTGCAGACCTTGCCAAGTTCTCTGCTCATCCTCATT