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Detailed information on CNT30116355


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697340Oryza nivaraOryza sativa15.0924.6593.57140forward
CNT30595670Oryza nivaraOryza meridionalis7.5432.7191.4370reverse complement
CNT30369870Oryza nivaraOryza glumipatula15.321.0490.14142forward
CNT30106850Oryza nivaraOryza longistaminata10.7820.5391100forward
CNT30578398Oryza nivaraOryza barthii14.5522.4693.33135forward

Expression of CNT30116355

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MRWKKTEVWIQTLDLNTAYINRLLQIPSKIKKN*

Sequence

>CNT30116355
GTAAACTCCCAATCCTCTTCCCTCGAGTTACCAAACAAGCCGTAGAGGTTTCACTAACATAAAGCATATATGGCTGTGTTTAGTTCAGCGTAAAGTTTGG
ATTTTGCTTGAAATTGGAGATGATGTGATTGAAAAGTTGTGTGTGTATGACAGATTGATGCGATGGAAAAAGACTGAAGTTTGGATCCAAACTTTAGATC
TAAACACAGCCTATATAAATCGGCTGCTGCAAATTCCAAGCAAAATAAAAAAAAATTAAGTGCAGACAGCCATGTTGGGTTGTGCGCTTTTGGGGTACAA
AGTATAAGGTGCTCTTTAAACAACCTATCGAGACCGAAACAAAGATCGGATGTGTGGGTGTAGACGACAAAAGGAGGAGAAGAAGAAGAAGAAGAAATTC
GAAGATGAAGAGAGGAGTTGAAGAGCCAAAAGCTCTCACCCATGCACTGTAGTTGCGGTGACCGGGAGCGCCCTCGCCGGCCATCCCCATCAGCTGCGCT
CTCCGGATCATCGCCACTGCCATGATCACTGCGGTTTTTTTGCTCCTTCGATTCGATCTGCTCTCGCTCGCGTCGGCATCGCCTGCTTGCTAGGGTTAGC
TCTCGCTCTCTTTTCCCTTCTTCCCTGATCCCTGATTCCCGACCCGACCCGACGGTCTCCCTCCGGATTTTGTTTGGGTTCCTTTTTTTTCTTGGGCTAA
TTAAATCCATACCATTACAACTGCTGTATCGATTCAGATAAATGCCACTACAATTCGTTTATTCGTAAGCGTGCCATCCAAATACACGATAGGGGCGATA
GGGGCGAAACTCCTAGGCGATTGACGGTCAGGAGCGATCGGGTTTTCCTCTCCTCCACGTGGTTTCCTTTTTTAGCACCGTATTACTTTCCTATTTTAGT
AAATTTATGCACCCAAAGTTTATACACC