CANTATAdb - search

Detailed information on CNT30116352

BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 2e-34

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30226858	Oryza nivara	Hordeum vulgare	20.93	62.28	90.86	175	forward
CNT30589645	Oryza nivara	Musa acuminata	13.28	20.48	86.49	111	forward
CNT30664801	Oryza nivara	Triticum dicoccoides	8.85	23.64	89.19	74	forward
CNT30369897	Oryza nivara	Oryza glumipatula	96.05	100.75	99	803	forward
CNT30575558	Oryza nivara	Oryza barthii	86.72	100	98.34	725	forward

Expression of CNT30116352

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MLRLMPRMLALMAVQRQTAASRSTRPPSNGQHCSLSGTPIFSFSRLSTLAHTLSFSASIGHLFPPPDGGDGGGVTGGVGVGQ*

>peptide 2 (35 aa)
MTKHSISTCERVYIYMDIDAWCNGMVIKGSEDRLI*

Sequence

>CNT30116352
AGCAAATTAAACTAGTTATATATAGGGTTCATGAGATGAGAGTAGCTAATTATTAACACAAGTGGAAGAAACTTTTATTTGACGGTATACAAATAACAAG
ATACAGAGATCAGGCTGATGGATCAATCATATCATATCAGTGATAGATCGATCGTTCGACACATATATATGTATGACAAAACATAGTATAAGTACGTGCG
AAAGGGTTTATATATATATGGATATTGATGCATGGTGTAATGGTATGGTAATTAAGGGATCGGAGGATCGATTAATTTAGAGAGGGCAGTAGTTGAGAAG
GAGAGAGAGATCGACGGGGATGTTGAGATTGATGCCGAGGATGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGGCGTCGAGGTCGACGAGGCCACCC
AGCAACGGGCAGCACTGCTCGCTCTCCGGCACGCCGATCTTCAGCTTCAGCAGGTTGAGCACGTTGGCGCACACGCTCAGCTTCAGCGCGTCGATCGGGC
ACTTATTCCCTCCACCCGACGGCGGCGACGGAGGCGGCGTCACCGGCGGCGTCGGTGTGGGGCAGTAGGGCTCGCATGCCTGCACTACTGCACCCATCTG
CATGGTGAAGAGCACATTGAGGGCAAGGAACAGCGCACAAACCTGCACCTTCTTGCCGGCCATCTTAATTAATTAGCTAGCTCTACTACTGCTTAGCAAT
TAATTAGCTTAATTAGCAGCTACTGCCTATAGCTCAGCTCGATCGATCGATCAGAAGAAGCTGGAGCTGCTTTTTGATATTTGCTAGCTCGATCGGCCGG
GATGCATTTCCTCGGGGGTGTTTTCGCTCCTATTTA