Detailed information on CNT30116327


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691472Oryza nivaraOryza sativa41.22587.57185forward
CNT30553169Oryza nivaraOryza glaberrima89.0971.94100400forward
CNT30110851Oryza nivaraOryza longistaminata36.7545.4595.15165forward
CNT30101533Oryza nivaraOryza rufipogon89.0913.8297.5400forward
CNT30575554Oryza nivaraOryza barthii65.92100100296forward
CNT30604299Oryza nivaraOryza punctata29.44.4186.36132forward

Expression of CNT30116327

Peptides detected in this lncRNA

>peptide 1 (38 aa)
LASPPIPPHSVVHPKSKKPEWESSFLLSSPSSSCRPPG*

Sequence

>CNT30116327
TCTAGCTTCCCCACCCATCCCTCCTCACTCTGTAGTCCACCCTAAATCCAAGAAACCAGAGTGGGAGAGCTCCTTCTTGCTCTCCTCGCCATCATCTTCT
TGCCGGCCGCCGGGATGATGCCATCTCCGCCGCCCAACGGCCGATCTCTGGGAACGCCGACCTCGCCACGGTAGCTCTGGAGCGCGGCCACACCGTCGTC
AACGCGCAGCCGTGGGTTCGCGCCGCTGTTCCCGTCGCCTCGAGGCGAATCCGGTTGAGCTACTGCGCCACCAGCTTCGCCTCACCATTCTCTCCAAAAC
GCCCCAAGAATCTCTCAGAACCGTGCAGCGAGGAGGGAGATCGACCACCGTCTTCTCCAACTCCGATCTAGTGCCTCCGTCGTCGATTCCCGTTCAACCG
ATTCGGAGAATTCGGAGTACGTGCAGCAAAGACTCTGAGGTTGAGTGTG