CANTATAdb - search

Detailed information on CNT30116324

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30340693	Oryza nivara	Eragrostis tef	20.94	2.21	88.51	174	forward
CNT30579587	Oryza nivara	Echinochloa crusgalli	20.22	22.34	89.29	168	forward
CNT30593969	Oryza nivara	Eragrostis curvula	20.94	20.37	89.08	174	forward
CNT30603884	Oryza nivara	Oryza punctata	48.01	27.88	93.48	399	forward

Expression of CNT30116324

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MHLGERNAFVVLLVAALPRLQHGFLERWRFLLMCLSQYLWSAMASFEHRHFLPSVRRHLPGSGSESAFGKP*

>peptide 2 (79 aa)
LVADFARFASFSIGLVGVGFDCGFVAVMTNKPRFSMLRLDLFKDQNCADLNLCVSEPPQTHHVRIDFCETEFIRTENRN*

>peptide 3 (30 aa)
MIFASNLLQVNNMEVCMYVVMSKARPDGNV*

Sequence

>CNT30116324
CTCGTCGCGGATTTCGCACGGTTTGCTTCGTTCTCGATTGGGCTTGTTGGTGTCGGATTTGATTGTGGTTTCGTGGCTGTGATGACAAACAAACCTCGTT
TCTCGATGCTGAGACTTGATTTGTTCAAGGACCAGAACTGTGCTGACCTTAATTTGTGCGTGTCTGAGCCACCCCAAACACACCATGTCCGAATCGATTT
CTGCGAAACTGAATTCATAAGAACTGAAAATCGCAATTAGCTGGTATTACATTGCAGAAGCTTGAGAACAGAAAGAAGGGAATAACATGCATGGGTAACG
CCAATACTAAAGCTATCCCATGGCAAGCTGAAATTCTGAAGGACTGACTGAAGGCATCCACGATCATGCATCTTGGTGAAAGGAATGCTTTTGTTGTTCT
GCTGGTTGCTGCTCTCCCAAGGCTTCAACATGGCTTTCTTGAACGGTGGCGGTTTCTGTTGATGTGCCTCTCACAATACTTGTGGTCGGCCATGGCCTCC
TTTGAACACCGCCATTTCTTGCCATCTGTTCGACGGCATCTTCCAGGTTCTGGGTCAGAGTCTGCATTTGGGAAGCCTTGATAGAGAGGCCTCCAGCTCA
CTGCAGTACAATAAGTGAACAGAAAAAAACACTGTCCATCATGAGTTGCAGAGAAATACACAGATCAATGGCCTTACATACATACATGCACACATGATCT
TTGCTTCTAACCTATTGCAAGTTAATAACATGGAAGTGTGTATGTATGTGGTGATGAGCAAGGCCAGACCTGATGGCAATGTGTGAGCAGCCTTGGCGAA
TCTGAGCATCTTCTGTTCATCAAGAAAGGGG