Detailed information on CNT30116322


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FEQ8|PER2_MAIZE, E-value = 3e-134

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30385102Oryza nivaraTriticum turgidum50.1769.283.83600forward
CNT30341070Oryza nivaraEragrostis tef5.123.1991.861forward
CNT30595986Oryza nivaraOryza meridionalis18.9823.7288.99227forward
CNT30100585Oryza nivaraOryza rufipogon30.3576.182.37363forward

Expression of CNT30116322

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MSEKTEALRRSGTKEEQWERPTVWAPESTTMSSTERPLTAKLETRSLRLDVGGGRKSIGPESLEKVPSRRPDGMSK*

>peptide 2 (67 aa)
MTLQFFLICPWYPVFTWMLANFTMAALNLSSHHPGMTALSTTIFAVSGDVRSAASEVKSTLWSSTFL*

>peptide 3 (44 aa)
SMGISSHPRFFSFQISDKHQYIAGTCCKKLNLQLFQVHMTLLHN*

>peptide 4 (55 aa)
MMSAHETTPGHAASTACLIASMRSKPRMDGLFGALSFSGVGLNGVGSRRIEASQP*

>peptide 5 (43 aa)
MVTKEGEHKCEAKVTSNHNIINTYACDLIKEGVKLSNRVRRHR*

Sequence

>CNT30116322
TCCATGGGTATCTCGAGCCATCCTAGATTTTTCTCTTTTCAAATTTCAGATAAACATCAATATATAGCGGGCACTTGTTGCAAAAAACTTAACTTACAAT
TATTCCAAGTACATATGACCTTATTACACAATTAGGTCAAAACAAAGAAATCCATAGCATGTAAACCTTGGGGTTCACAAATGAGGAATTAAGGAATGGT
AACAAAAGAGGGAGAACATAAATGTGAAGCAAAAGTCACATCCAATCATAACATCATCAACACGTACGCTTGCGACTTGATCAAGGAGGGTGTGAAACTA
TCAAACCGTGTACGTCGTCATCGTTGAGCACGTACTTCACCAGGTAATTGAATCACGCAGCTAAACTTGTAGATTAATCAGTAGTTGATGACCCTGCAGT
TCTTCCTGATCTGCCCCTGGTACCCGGTCTTCACCTGGATGCTCGCCAACTTCACCATGGCCGCCTTGAACCTGTCCTCCCACCACCCGGGGATGACGGC
GTTGTCCACCACCATCTTCGCCGTCTCCGGCGACGTCAGGAGCGCCGCGTCGGAGGTGAAGAGCACCTTGTGGTCGAGCACGTTCTTGTAGTACTGGTTG
TCCAGCGTGTTGGGCGTCACGAAGTCCAGCATCACCGTGGGATCGTTGCCGCCGGGCGTCGCGTCGAGCGGGCACTGCGACCTGAGGAACCAGGCGAAGC
CGCCGTCGATGTCGGAGAAGACGGAGGCGTTGAGGCGGTCGGGGACGAAGGAGGAGCAGTGGGAGCGGCCGACGGTGTGGGCGCCCGAGAGCACCACCAT
GTCCTCCACGGAGAGGCCCTTGACGGCGAAGCTGGAGACGAGGTCGCTGAGGTTGGACGTCGGCGGCGGGAGGAAGTCGATCGGGCCGGAGTCGTTGGAG
AAGGTCCCGTCGCGGCGGCCCGACGGCATGTCGAAGTAGACCTTCCCGCCGCTGAGGAAGTAGGTGGCGTCGCGCGCCGCGAAGGCGATGATGTCGGCGC
ACGAGACGACGCCCGGGCACGCCGCCTCCACGGCGTGCTTGATCGCGTCGATGAGGTCGAAGCCCCGCATGGACGGGTTGTTCGGCGCGCTCAGCTTCTC
CGGCGTCGGGTTGAACGGCGTCGGGTCCAGGAGGATCGAAGCATCACAACCCTAACAACAAAACACCATGCACATCTAAGTACACATAGCTCAAGT