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Detailed information on CNT30116319

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30100826	Oryza nivara	Oryza rufipogon	92.11	100	100	490	forward

Expression of CNT30116319

Peptides detected in this lncRNA

>peptide 1 (47 aa)
PLFSRCYISTSTPNGLDPNQIHGGGGRLHGAWRLIERRRARASRIVE*

>peptide 2 (32 aa)
MIEGDNLEEVLQELEEMNFIKTMHSTYHAIRI*

>peptide 3 (46 aa)
SSFLTLLHLHFNTKWSRSKPDPWRRGEAARRVEIDRATTSSGQSNS*

Sequence

>CNT30116319
TCCTCTTTTCTCACGTTGCTACATCTCCACTTCAACACCAAATGGTCTAGATCCAAACCAGATCCATGGAGGAGGGGGGAGGCTGCACGGCGCGTGGAGA
TTGATAGAGCGACGACGAGCTCGGGCCAGTCGAATAGTTGAGTGAGGAGACACAACGGTGGAGGCAGAGGCGGCTCATGAGCTTGAATCTGGTCTTCCTC
TTCCCCATCGATCCTGCGTCCATTGGAAAAGCTTGAGAGGAGAGCAACATGCAACAGACAATAATCCTGTGGGTCTGGGGTTCAGCACTTCAAAACTGAC
GACCATTGTGAGAATACATAGGAGGTGCTAACTAAGATGATTGAAGGTGACAATCTAGAGGAGGTGCTGCAGGAATTGGAGGAGATGAACTTCATCAAGA
CAATGCATAGCACTTATCATGCTATTAGGATTTAAAAAGAAAATTCATATAAGAGTTAGTTTGTAATCAATTTGTCTATATACTGAAATGACAATATTAC
ACAATGTGTAAAATGCCTCTGCTTCTTCCAAC