Detailed information on CNT30116295


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692428Oryza nivaraOryza sativa47.6650.6899.78449forward
CNT30678417Oryza nivaraSetaria viridis10.1929.0992.7196forward
CNT30522336Oryza nivaraSetaria italica13.1646.7997.58124forward
CNT30296550Oryza nivaraTriticum aestivum20.9147.1389.85197forward
CNT30589135Oryza nivaraMusa acuminata12.9531.7786.89122forward
CNT30553163Oryza nivaraOryza glaberrima26.1117.8999.59246forward
CNT30448528Oryza nivaraSaccharum spontaneum20.2812.3191.62191forward
CNT301613Oryza nivaraZea mays21.1334.9191.46199forward
CNT30683907Oryza nivaraTriticum urartu24.7335.4690.56233forward
CNT30361641Oryza nivaraSorghum bicolor23.1418.5292.66218forward
CNT30369879Oryza nivaraOryza glumipatula26.9635.3899.61254forward
CNT30147849Oryza nivaraBrachypodium distachyon11.6824.9492.73110forward
CNT30100699Oryza nivaraOryza rufipogon47.6640.8299.78449forward
CNT30575527Oryza nivaraOryza barthii32.2748.1899.34304forward
CNT30603857Oryza nivaraOryza punctata48.7352.7692.59459forward

Expression of CNT30116295

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MSGRMLKRVRLNSCTAAGTSAPTARGAYPVAHAE*

>peptide 2 (75 aa)
MSVLPDRPRSDSILRARKDSHQWKRAYRGEAPMRTSLAKRSGRRMEARMPIMAETEWPTKAQRGMRSASRMASRS*

>peptide 3 (62 aa)
MRVPLLGHTYRSRSCGGFFFSFVLTRRCGYAHARRAAVACGGRWISTGRERGGAPELGGWGR*

Sequence

>CNT30116295
TTGGCAGGTCGCGCCGAAATATTTTCTAGGCCTGAGAAGAGGAGGGTAAAAATGCAGTAAAATCCGACGCGGTAAAAAAAAAAAAAAACAGTAGAGGGAT
GCGTGTCCCCCTGCTGGGCCACACGTACCGTAGCCGCAGCTGCGGTGGTTTTTTTTTCTCCTTCGTTTTGACTCGTCGCTGCGGCTACGCGCACGCGCGG
CGCGCCGCGGTGGCGTGCGGGGGGCGTTGGATTAGTACCGGGCGAGAGCGCGGCGGAGCACCTGAGCTAGGAGGCTGGGGGCGCTGAGGTGGGGGAGGTG
ACCCTCGGTCTGGAGGAACTCGACGGTGGTGCGGCCGCCGAGGTCGGTCTTGAAGACGGTCTGGCAGACGTGGAGGGAGATGTCCGGGCGCATGTTGAAG
AGGGTGCGGCTGAACTCCTGCACCGCCGCCGGCACGTCGGCGCCCACCGCCAGAGGCGCGTACCCCGTCGCCCACGCCGAGTAGTTCGCCCCCATCGCGT
CGAACACCTGCTGTATCTCCTCCAGCTCGAACCCGCCGTGGTAGTCGCTGTCGTTCAAGAACCTGCACACACATGTCCGTGCTCCCCGATCGCCCCCGAT
CAGATTCAATTTTAAGAGCGAGAAAGGATTCACATCAGTGGAAGCGAGCGTACCGGGGAGAGGCGCCGATGAGGACAAGCTTGGCGAAGAGGTCAGGTCG
TCGGATGGAGGCGAGGATGCCGATCATGGCGGAGACGGAGTGGCCGACGAAGGCGCAGCGCGGGATGCGGAGCGCGTCGAGGATGGCGAGCAGGTCGTAG
AGCACGACGCGGTGGTCGCGGGTGAGGTACGGCAGCACGCGGCTCCACGCCGACTGGTCCGTCCCGAAGCCATGCGACAGCACCACCACCCGCTCGCCGC
TCCCCACCACCCGCACGTTCAGGATCTGCAGCAGCTTCGCCC