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Detailed information on CNT30116279


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678563Oryza nivaraSetaria viridis4.1839.5290.3683forward
CNT30519943Oryza nivaraSetaria italica19.3528.1183.59384forward
CNT30616919Oryza nivaraSesamum indicum7.7647.6885.06154forward
CNT30295853Oryza nivaraTriticum aestivum22.1765.4890.91440forward
CNT30223811Oryza nivaraHordeum vulgare5.9955.6194.96119forward
CNT30563752Oryza nivaraActinidia chinensis7.3629.9882.88146forward
CNT30592095Oryza nivaraMusa acuminata10.0367.4683.42199forward
CNT30552704Oryza nivaraOryza glaberrima5.7939.6692.17115forward
CNT30243876Oryza nivaraAvena sativa22.1758.4382.05440forward
CNT30663726Oryza nivaraTriticum dicoccoides10.5825.3990210forward
CNT30260467Oryza nivaraBrassica rapa8.8241.9783.43175forward
CNT30139766Oryza nivaraLolium perenne7.0528.5785.71140forward
CNT302263Oryza nivaraZea mays16.4229.1987.12326forward
CNT30228927Oryza nivaraAnanas comosus6.251.987.8123forward
CNT30687547Oryza nivaraTriticum urartu2.5222.039450forward
CNT30347744Oryza nivaraEragrostis tef16.0220.3183.65318forward
CNT30369978Oryza nivaraOryza glumipatula9.3224.63100185forward
CNT30576697Oryza nivaraOryza barthii5.5425.3581.82110forward

Expression of CNT30116279

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MSWVTSKKPLALAPRACTTRSGIRSLSKLASFSTRW*

>peptide 2 (56 aa)
MLRLSTILPTGCSGTMSSGHVLVTSSGSKSKRSSWSGSMVWMNSFHSGKLPAAMES*

>peptide 3 (34 aa)
MLLISWVRRGSESASIHLLMNRGMGSSRPPRRGA*

>peptide 4 (35 aa)
MVVPREPTVSELLLFHTGAPELVLHSGPLNELDGRC

Sequence

>CNT30116279
GGATTATAATTAAATAATTAATTTACTGTATATAAATTATTGATAAAAGGTGTGCTTACAATAATGATGAAGTATCAGGAGAAACGTGTCTTCAGGTTAC
AGATTATTACATGATGGTGGTACACGAATTGTGCGGTGATAGAAATCATATATGTCCTCTTTCCAAAATAGACTCGATCGATCGGTATTGCTAGAGTATG
AGTAGCAATTATTATCCGATAGAGTGAGGCTGAGGCCTTCCGTGACTGAAGCAGATTGCAACGCTGATCGATCTCCTTACATGCTCGGCTTCGCGCTGAG
ACGGCTCGCCAGTTTCTGACCCAGAGACCTGTCAGCCTGCATCGAAAGACATAGTAGATTGTTCAAGTTGCAGTTCAGAACCAAGAACAGATTATACAGA
TCATGTTGTACGTTTTTTTTTCAATTTATGGAACAAACTGTAATGTGATGTATTTACCTGAGACCAGTAGGAGAGCCAGATGCTCCTGATCTCGTGGGTG
AGGCGAGGGTCAGAGAGTGCGTCGATCCATCTCTTGATGAACCGCGGGATGGGAAGTAGTCGACCTCCTCGTCGCGGTGCATGAAGTTCATGAAGCCGTC
GTAGTGGTTGTTGTGGTGGGCGCACTTGGGCGCGTTGGGCGGGAGCAGCAGGTAGTTTGGGCCGAGGCGAAGTTGTCGATGTTGCGGTTGAGCACCATCC
TCCCCACGGGCTGCAGCGGGACGATGTCCTCGGGCCACGTCTTGGTGACGTCGAGCGGGTCGAAGTCGAAGCGGTCCTCGTGGTCGGGGTCGATGGTCTG
GATGAACAGCTTCCACTCCGGGAAGTTGCCGGCGGCGATGGAGTCGTAGAGGTCCTGCGTGGCGTGGCTGTGGTTGGTCCCGCCGACGGTGACGGCCTCG
TCGTCGAGCAGCGACTTGACGCCGCAGGTAGGCTTCCAGTGGAACTTGACGTAGTGCGACTTGCCGGCGCGGTTGACGAGCGTGTAGGTGTTGACGCCGG
AGCCGTCCATGTGGCGGTAGTCGGCGGGGATGCCGATGTCGTCGAAGAGGAAGGTGAACATGTGGAGGCTCTCCGGGTGGTGGGAGAAGAAGTCGAGGAT
GCGCCAGTGAGGTGGGTGATGTCGTGGGTGACCTCGAAGAAGCCCTTGGCGCTGGCGCCGCGGGCGTGCACCACGCGCTCCGGGATACGCTCCCTGTCGA
AGTTGGCCAGCTTCTCAACCAGGTGGTAGTCCTCCAGGAGGATCGGGCCTGAATTTTCAGTGTTCCCAGTTCAGTTCAGTCCATCGATCACCAGTTCATC
ACCACTCAACTTGAATTAAACTGACAAATTAACAAGCTACGGAAGACTATAACTATGCAGTAGTATTTGAGTTCTTACTAATTTGCCAGTGAATTTCTCC
GGACGTAGTCTGGACCTAGCTGAGATGTGTACAAAATCCTATGAAATTCATGTGCTCTAAGGTTCTTTCTAGAACGCAACAGTTTCAATTTGTAGTTAAC
AATTCAACTTTCAAATGATTCCGGAAACAAACTTGTAGCTTGAAAACAGAACAGGTTCTAGTCTTCTGGGCATATGGTGTAACCAAATACTATCAAAGTA
ATTTTTTTTAAAAAAAATGAATCCAAACTTGCACAGATTTACTGGGATGACGTTCTTGAATTTAAACTAGTAGCAAAGGCTAGACCACCGACGACATAAA
AAGGTAATCTCAAACCAAATCTACTGCAGTGTCCAAACTCCAGGCACTATTTGGCTGTATCCGAACCACACGGTCCACACGGACCTCGACACGATCACAC
GACCGCGCCCAAATCGACAAAACGACGTACTGCGAATCACAAGGGGAAGAGGAAGTGGGATCGGCGTGTGCTTGCCATGGTCGTACCTCGTGAGCCGACG
GTGAGCGAGTTGTTGTTGTTCCATACGGGGGCGCCGGAGTTGGTGCTCCACAGCGGGCCGTTGAACGAGCTCGACGGGCGGTGCT