Detailed information on CNT30116257


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692252Oryza nivaraOryza sativa64.356.4799.46371forward
CNT30553128Oryza nivaraOryza glaberrima64.349.299.46371forward
CNT30107330Oryza nivaraOryza longistaminata39.3484.0795.15227forward
CNT30100901Oryza nivaraOryza rufipogon88.2199.899.41509forward
CNT30575620Oryza nivaraOryza barthii64.352.0399.46371forward

Expression of CNT30116257

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MRLCKWILCQVEDRTPRHQLAHSLGQHTVHFSCTVYWISTERRLY*

>peptide 2 (35 aa)
GGVCMLPLQWMGKNLAMQLSFYRRGRGRFAMSVCP*

>peptide 3 (37 aa)
MQVDTMSSGRPNPKASASPFTWTTHCPLQLHSILDKH*

Sequence

>CNT30116257
TGGTGGTGTGTGTATGTTGCCGTTGCAATGGATGGGGAAGAACTTAGCAATGCAGCTGAGTTTTTATAGAAGGGGGAGAGGGAGGTTCGCGATGTCAGTG
TGCCCATGAGTATTGGCTACTAATGCGACTATGCAAGTGGATACTATGTCAAGTGGAAGACCGAACCCCAAGGCATCAGCTAGCCCATTCACTTGGACAA
CACACTGTCCACTTCAGCTGCACAGTATACTGGATAAGCACTGAACGAAGACTGTATTAACTTATTAGCAGTTTGAAACGTATTTGATGCCCGTGCCAAG
CAACTAAACAAGAGGCCTTCGAATTGTCATTGACGAAGACCTGAGCTACGGGCCTAAGGTGTGTCCATGTTTTACTCCAGTTTGGATCATATGACCGGCA
TCTTGGATCTTGCCAATTGCAGTCCCAGAAATTCAGGTAGGAGCAAATGAAATGAGGGGCATATGCAAATTGGGACTATCTTTAGGACACGTTTGCAGGC
AGGATTATTTTTGCCGTTTATATGGGAAATCGAGCTGATTTGAATTAGATTCCTGTATTTGGTTTCATGTACTTGAG