Detailed information on CNT30116256


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 6e-81

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692288Oryza nivaraOryza sativa10045.9599.56227forward
CNT30522081Oryza nivaraSetaria italica10039.2193.39227forward
CNT30392320Oryza nivaraTriticum turgidum86.349892.35196forward
CNT30439818Oryza nivaraAegilops tauschii93.3970.991.04212forward
CNT30444735Oryza nivaraSaccharum spontaneum99.5639.5895.13226forward
CNT30721558Oryza nivaraTriticum spelta96.9298.2191.82220forward
CNT30369862Oryza nivaraOryza glumipatula92.9595.9199.53211forward
CNT30106627Oryza nivaraOryza longistaminata89.4310099.51203forward
CNT30575680Oryza nivaraOryza barthii99.5690.7699.56226forward

Expression of CNT30116256

Peptides detected in this lncRNA

>peptide 1 (74 aa)
GDDLPALVVALAPLPERDGGAVADAAVVLVAVEGVEVEADVVQHANAAEALAHVAALRPQHRLVRVLRVERRQLH

>peptide 2 (74 aa)
GTIFQRWLSPSHHFQSATVVPSRTPPWSLSPWRASKLRRMLFSMRMQRKLLPTSPLSVHSTDSSGYSGLNGASFT

>peptide 3 (37 aa)
RGRSSSAGCRPRTTSRARRWCRRGRRRGPCRRGGRRS*

Sequence

>CNT30116256
AGGGGACGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCGCGACGGTGGTGCCGTCGCGGACGCCGCCGTGGTCCTTGTCGCCGTGGAG
GGCGTCGAAGTTGAGGCGGATGTTGTTCAGCATGCGAATGCAGCGGAAGCTCTTGCCCACGTCGCCGCTCTCCGTCCACAGCACCGACTCGTCCGGGTAC
TCCGGGTTGAACGGCGCCAGCTTCACC