Detailed information on CNT30116251


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002574, E-value = 6e-58

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694488Oryza nivaraOryza sativa15.0732.8188.21229forward
CNT30555464Oryza nivaraOryza glaberrima13.0920.988.44199reverse complement
CNT30106078Oryza nivaraOryza longistaminata16.1286.2790.61245reverse complement
CNT30104352Oryza nivaraOryza rufipogon15.4637.0790.21235forward

Expression of CNT30116251

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MHNAIRGMPLFRLKLPDSVEAHGPKGLARPGSDTALCPHVIAGISQDKRLHATGGLTLANNRGARPSLSIFPGTTTPIGTSTHSPFIHPDIHGGVKNK*

>peptide 2 (96 aa)
NLPGIGKRQFQIISCSYFHANFSLADHSAVAIGNYSQTDFSATTAKIKNFFAVAIVNYSQTISLAKNKNFLTNFSPLLQAKSSTQKRRNRKVCIQS*

>peptide 3 (51 aa)
MLVWIAAPKIIPWGGVAISPLGRRYRRFFSLLALFRCRGRMHYCYVAWLHD*

Sequence

>CNT30116251
CCAACCTCCCAGGAATCGGGAAAAGGCAATTCCAAATTATATCATGTTCTTATTTCCATGCAAACTTTAGCTTAGCTGATCACAGTGCGGTTGCAATTGG
CAATTACTCCCAGACCGATTTCTCGGCAACAACTGCCAAAATCAAAAACTTTTTTGCAGTTGCAATTGTCAATTACTCCCAGACCATTTCTCTAGCCAAA
AATAAAAACTTTTTGACTAACTTTTCACCGCTTCTCCAAGCAAAATCCTCCACACAGAAGAGGCGAAATAGAAAGGTCTGTATCCAATCGTGATCGTTAG
GATTTTCACACTTTAGAATCTTTGGCTCCTGCACTTTCTAGAAATTACTACTCAACACCCCTGCTGGCTGTAGGCAAATGCACAATGCCATCCGCGGGAT
GCCCTTGTTCCGGCTAAAGTTGCCGGACAGCGTGGAGGCACACGGACCAAAAGGCCTAGCTCGTCCTGGGAGCGACACCGCTCTCTGCCCCCATGTGATC
GCGGGTATCTCGCAGGACAAGCGTCTACATGCCACAGGGGGACTGACCCTAGCTAACAACCGTGGTGCCCGCCCGTCGCTTTCCATTTTTCCGGGCACCA
CCACCCCCATCGGCACATCCACTCATTCCCCTTTCATCCACCCCGACATACACGGCGGCGTGAAAAACAAATGAGGAGATCAGGCGACGAGGCGGACATC
GCCCTGAGTTTAGTAGATATCCGCCGTGCCGGTTGGTAGCGGTAGAGCCATGTCATATTTGTTACGTACTGCAGGGTGGATGGTCCCGGGGGTCTAGTTA
TGTTAGTTTGGATTGCAGCGCCAAAAATAATCCCGTGGGGCGGAGTGGCGATCTCGCCTTTGGGCCGTAGGTATCGCCGTTTTTTTTCGCTGCTTGCCCT
ATTTCGTTGTCGTGGGCGTATGCACTACTGCTATGTGGCGTGGCTGCACGATTAGTGGCTGGAAGCCAAAGCTTAAGCTTGGTTAATGAGGCATTGATGA
CTGACGTTGATGGTTGTAGTATTGTAAAGAAAAAAATAACATCGGTCGCGCCCGGGGCGGTGGACCAGTGATATAATATAGCTTTTCCGGTGAGTCGCCA
ACACGGCAGTTGGTTGGCGCGACGTCGTGACCCCGCGGCGCCAGGTGCCTCGCTGTCCTTTTCCCGGTGACGAAGCGGCCCAGCCTAGGTGTCACGAGAT
GTGGAGATTAGCGCTGTAGTTTAGGTGTGGCAGCGGCCTACGGAAAGGATTTCAAGTTTTGGAACGGGTGAGGGTGAATAGAGCACCCGCAATGGTAAAG
TAACGTGCTCTCTATAAAACATTACAACTCAGCAATAGACTAGATTAATAGTAAACTACCTCAATAGTATGTCTACATGGATATCTATAGCTCTTTAATC
CATTGCCTCGTTTTTCTCTATAAACTATCTACAGGTTAGTAGATAGTTTTGCTCTCTCTTCATTTAATCTCTTTCAAGTAGGAAAATATGCTGATATGGA
TATCTTGTAGAGAGCCTATA