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Detailed information on CNT30116237


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39176|ERLI1_ARATH, E-value = 8e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552971Oryza nivaraOryza glaberrima74.3595.1599.54432forward

Expression of CNT30116237

Peptides detected in this lncRNA

>peptide 1 (38 aa)
VRTDAYTMRSIEYKLINQLCRYTYTSRRMKHALITSWN*

>peptide 2 (74 aa)
MSARPWMRLQHGCRGGVPSCTFISPFSTFAHTPSFSVSIGHLPPPPPPPLPPPPPPPLPPPPEPPPPLPPPPEPP

Sequence

>CNT30116237
AGTACGTACTGATGCATATACGATGAGATCCATCGAGTACAAATTAATTAATCAATTATGCAGATACACATATACAAGTAGACGAATGAAGCATGCTTTA
ATTACGTCGTGGAACTGAATCATATGCATGCATATATATCTCATTAATTTACGGGATGAAGGAGGAAATTAAGGCACGCAGATACATATGATGATTTGAA
CAAGGAACAAATTAGACATAGATAGATATATAGTTGTACGTGGCCTGGTGGTCGTTCTTCGTACGTTCTTGTGTGTAGCAAGCAGTGAAGTAGAATGGAG
CAGCAGCTATATTAGTTGCTGCACTGGAAGCCGGAGGGGACGGAGCGGCCGCAGATGTCGGCGAGGCCCTGGATGAGGCTGCAACACGGCTGCCGCGGCG
GCGTCCCCAGCTGCACGTTTATCAGCCCATTCAGCACGTTCGCGCACACCCCCAGCTTCAGCGTGTCGATCGGGCATCTTCCTCCTCCCCCGCCGCCGCC
GCTTCCTCCTCCTCCGCCGCCTCCGCTTCCTCCACCGCCTGAACCTCCGCCGCCGCTTCCTCCTCCACCTGAACCGCCGCC