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Detailed information on CNT30116236


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554094Oryza nivaraOryza glaberrima19.4639.4894.01167forward
CNT30108884Oryza nivaraOryza longistaminata55.7110099.37478forward
CNT30575679Oryza nivaraOryza barthii58.7489.8499.4504forward
CNT30603650Oryza nivaraOryza punctata18.8835.9288.27162forward

Expression of CNT30116236

Peptides detected in this lncRNA

>peptide 1 (81 aa)
VEETLAHRRKLSTHRGKQRRWRGCGLRVDGATATRHSPRRRRSPLRRPSPPLATFSPIACPPIRVGEDQPPPSWDPIPLAW*

>peptide 2 (36 aa)
MGSILICQDRPLFSSSSWRFAREHRLSFFVESSSSC*

Sequence

>CNT30116236
CGTGGAAGAAACCCTCGCGCACAGGAGGAAACTATCAACGCATAGGGGAAAGCAGCGGCGGTGGCGCGGGTGCGGATTGAGAGTCGACGGCGCGACGGCG
ACGCGGCACTCTCCCCGGAGGCGGCGCTCTCCCCTCCGCCGACCGTCCCCTCCGCTGGCCACTTTCTCACCGATTGCATGTCCACCAATTAGAGTTGGAG
AAGACCAGCCTCCTCCTTCTTGGGACCCTATACCCTTGGCCTGGTAGTACTGGATTGATTTTAAGACCAATTTTCAGTACTGGAGATGGGAACACTGGAG
CTGGGTGACTGAAGCGCATGGTGGCATTAGTGCTAAGCTTAAACACTTGCATTCAATTTGTAGTTTAGCTCTTAGCTGGCTACTTCTATTTATTCTAAGA
AAAACAACTGAATTGTACCCATTTTGATTAATCTGTGACCTTTTCATGTCCTTCAAATTTCATCATCTTCTGCATTTGTTGATCTAATACGGCCCAGCCA
CCTGTTTTTTTTTTCATTCATAGTCTGCATGATCATCGCGCTTCACCCTGAATGGGATCGATCCTGATCTGCCAGGATAGGCCTCTGTTCTCGTCGTCAT
CATGGCGCTTTGCCCGTGAGCATCGCTTGTCGTTCTTTGTTGAGTCATCGTCAAGCTGTTAACACCAAAATTTGGTACGGTTGTTTAGAGGATTCAGTTA
AGGAAAGAAGTCAATCAACCGATCAGGACTTATATCTTTTCTTTTATCTTTAGAAAACTTGTATCTTGTCCAATTAGAACTAATATCAACCTAAGGGTAT
AAATATGTACACCCGTGGACTTTGTAATCTATTTTCACATATCAATACATTACTTTCG