Detailed information on CNT30116181


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10M00|C3H22_ORYSJ, E-value = 6e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3046605Oryza nivaraPrunus dulcis43.2728.1281.67180forward
CNT3067122Oryza nivaraLeersia perrieri65.8750.8394.53274forward
CNT30369758Oryza nivaraOryza glumipatula65.8710099.64274forward
CNT30152732Oryza nivaraPrunus persica38.9424.8881.48162forward
CNT30706326Oryza nivaraPrunus avium38.9447.9382.1162forward
CNT3057696Oryza nivaraAmborella trichopoda40.3840.184.52168forward
CNT30575799Oryza nivaraOryza barthii10049.8899.28416forward
CNT30603843Oryza nivaraOryza punctata65.8710097.45274forward

Expression of CNT30116181

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MQIEWVSAVQASGGRAAGEVTLIVPILVGDLALLLVRLDEHAGVADEMRIALGQDQLHRLRVHEGDEPEHALLLVRDAHVVHRTVDAA

>peptide 2 (88 aa)
KQAGIEAVRLCDLQLRYSCSNSIHYETMNYSCAATASTNDRSELGYFYRADADRMGLCRPGQWGSCSRRSHLDRAYTCRGPCPSPCKA*

>peptide 3 (39 aa)
MKCGLPLAKISFTVSGYTKVTNPNMRFCWYGMRTSCTGP*

Sequence

>CNT30116181
AAGCAGGCAGGCATTGAGGCTGTTCGTTTGTGCGACTTGCAGCTGCGTTACAGCTGCAGCAACAGTATCCACTATGAAACAATGAACTACAGCTGTGCTG
CCACAGCTAGCACAAATGATCGGAGCGAGCTAGGATATTTTTACCGAGCTGATGCAGATCGAATGGGTCTCTGCCGTCCAGGCCAGTGGGGGTCGTGCAG
CCGGAGAAGTCACCTTGATCGTGCCTATACTTGTCGGGGACCTTGCCCTTCTCCTTGTAAGGCTTGACGAGCACGCGGGCGTCGCAGATGAAATGCGGAT
TGCCCTTGGCCAAGATCAGCTTCACCGTCTCAGGGTACACGAAGGTGACGAACCCGAACATGCGCTTCTGCTGGTACGGGATGCGCACGTCGTGCACCGG
ACCGTAGATGCTGCAG