Detailed information on CNT30116140


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522318Oryza nivaraSetaria italica19.268.8481.08148forward
CNT30639906Oryza nivaraNymphaea colorata39.9521.4884.09308forward
CNT30524833Oryza nivaraPhaseolus vulgaris27.2413.8886.19210forward
CNT3042646Oryza nivaraPrunus dulcis27.8937.0788.84215forward
CNT30589303Oryza nivaraMusa acuminata48.7751.2386.7376forward
CNT3067156Oryza nivaraLeersia perrieri27.2478.0795.71210forward
CNT30683958Oryza nivaraTriticum urartu45.7831.7295.47353forward
CNT30361799Oryza nivaraSorghum bicolor37.2230.1292.33287forward
CNT30596039Oryza nivaraOryza meridionalis21.2762.699.39164forward
CNT30579178Oryza nivaraEchinochloa crusgalli39.6924.9895.42306forward

Expression of CNT30116140

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MRQHHHPLAAPHHPHVQDLQQLRPARRRRPAPSSPSSPAA

>peptide 2 (45 aa)
MRTSLAKRSGRRMEARMPIMAETEWPTKAQRGMRSASRMASRSST*

>peptide 3 (62 aa)
MRVPLLGHTYRSRSCGGFFFSFVLTRRCGYAHARRAAVACGGRWISTGRERGGAPELGGWGR*

Sequence

>CNT30116140
TTTTTTTCCAATAGAGTAAGGTAGGTAAAAATCGAGCACTAATGCTACAGTACACTCTCGGTCTTGGCAGGTCGCGCCGAAATATTTTCTAGGCCTGAGA
AGAGGAGGGTAAAAATGCAGTAAAATCCGACGCGGTAAAAAAAAAAAAAAACAGTAGAGGGATGCGTGTCCCCCTGCTGGGCCACACGTACCGTAGCCGC
AGCTGCGGTGGTTTTTTTTTCTCCTTCGTTTTGACTCGTCGCTGCGGCTACGCGCACGCGCGGCGCGCCGCGGTGGCGTGCGGGGGGCGTTGGATTAGTA
CCGGGCGAGAGCGCGGCGGAGCACCTGAGCTAGGAGGCTGGGGGCGCTGAGGTGGGGGAGAGGCGCCGATGAGGACAAGCTTGGCGAAGAGGTCAGGTCG
TCGGATGGAGGCGAGGATGCCGATCATGGCGGAGACGGAGTGGCCGACGAAGGCGCAGCGCGGGATGCGGAGCGCGTCGAGGATGGCGAGCAGGTCGTCG
ACGTAGGCGTCGAGGTTGTCGTAGCGGCGGAAGTCGAAGTGGTCCGGGTTGACGCTGCCGGCGCAGACGAGGTCGTAGAGCACGACGCGGTGGTCGCGGG
TGAGGTACGGCAGCACGCGGCTCCACGCCGACTGGTCCGTCCCGAAGCCATGCGACAGCACCACCACCCGCTCGCCGCTCCCCACCACCCGCACGTTCAG
GATCTGCAGCAGCTTCGCCCCGCTCGGCGCCGCCGACCCGCTCCCTCCTCCCCCTCCTCCCCCGCCGCCCA