Detailed information on CNT30116099


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691584Oryza nivaraOryza sativa89.2229.95100389forward
CNT30461578Oryza nivaraSaccharum spontaneum14.9121.2487.6965forward
CNT30100143Oryza nivaraOryza rufipogon10040.8699.77436forward
CNT30575334Oryza nivaraOryza barthii98.1710099.53428forward
CNT30603698Oryza nivaraOryza punctata10034.6694.95436forward

Expression of CNT30116099

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MVQNLVLRTTWGLKVIQSTKTLGSCFNNCISSGGVFPEGYTNASEEHTQSL*

>peptide 2 (55 aa)
MLPKNILNPYSFSRLHNTSAYKNTPSPPNISSKLELGGLRVICVGGLLAVGWLCW*

>peptide 3 (67 aa)
MGSQSHTVDQNARLLLQQLYQQRRGFSRRVHKCFRRTYSIPIAFQDSITQALTKTHRAPLTFPANWN*

Sequence

>CNT30116099
CTACAAAAGACATTAATTAATAATACTAGTATGTAGCACAAATATTCCAGCAATGTGAAAAATCTAATGGTACAAAACTTAGTCTTACGGACTACATGGG
GTCTCAAAGTCATACAGTCGACCAAAACGCTAGGCTCCTGCTTCAACAATTGTATCAGCAGCGGCGGGGTTTTTCCCGAAGGGTACACAAATGCTTCCGA
AGAACATACTCAATCCCTATAGCTTTTCAAGACTCCATAACACAAGCGCTTACAAAAACACACCGAGCCCCCCTAACATTTCCAGCAAATTGGAACTAGG
CGGGTTACGCGTTATTTGCGTAGGGGGACTCCTCGCGGTTGGCTGGCTGTGCTGGTGATCGGCTGTAGCTTCGTGCACGAGCTGGTGGTGGCGACCTGCT
GTAGCTGCGCCTCTTTGGAGAACGATCCCGTGGGCT