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Detailed information on CNT30116097


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595791Oryza nivaraOryza meridionalis72.2486.3896.88609forward

Expression of CNT30116097

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MAVSLASTEAWSGPARKAPARALCCCCWAKNWAWICWIWAGPRWVSPIGPFVADAAGEAA*

Sequence

>CNT30116097
GGTACATATAGTTACATAAGCTACTGAATTTCCAACATGTAACAAGGGATTACAGCTTAATTCTCGACCGGCCGCGCCGTTAAAAAAACAACCGGCAGCT
CAACCAGGAGATCAGATCACTGAGTACACCAACGACACTTGCACGACGACGTAATACCAACGACCTTACTACTACTGAGTACTGACTAGTTACTGCTACT
CGTAGCAGCCATGGCCGACGTCTAAAATGCCACCGAGCCATGGAAGCCACGGAATTCAGAGAAGATTACACAGCTAGTTGAGTTGAGTGACTCTAGCTTG
ACGAAGACTACTACTAGTACTAGTAATAGACTAGTAGTAGCTGCTTCTGCTTGTTTATGAGAGGATTGAATCCCAGTCGATCTCCCAGGACGGGTACTTG
CGCAGGTGGAATGTCTCCGACTCGTCCCATGGCGCCTCCGTGAAGTCCAGCTTCTCCATCTCCGGCACCGGGGGCGACAGCGGCGTGGGCAGAGGAGGGG
AGCCGCTGACTCGGCGGGGGTGTTCTTGGACGAGCTCGTGGCGAGGGACTGGCAGATGGCGGTGAGCTTGGCGTCGACGGAGGCGTGGAGCGGGCCGGCG
AGGAAGGCGCCGGCCAGGGCCCTCTGCTGCTGCTGCTGGGCCAAGAACTGGGCCTGGATCTGCTGGATCTGGGCTGGGCCCAGGTGGGTCAGCCCCATCG
GCCCGTTCGTCGCCGACGCCGCAGGTGAAGCAGCATGATACTGCGAAGAGTACAGCGGAGGTAGCTGCGAGAAAGACGAGGTGGTGGTGGCGGCGGCGGT
TGTGATAGAGGAAGTGGGATAAGATGGGGTGGGCATGTAAGAA