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Detailed information on CNT30116094

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000778, E-value = 1e-48

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30674834	Oryza nivara	Setaria viridis	36.48	50.08	89.1	321	forward
CNT30532843	Oryza nivara	Eucalyptus grandis	25.23	30.33	90.09	222	forward
CNT30316236	Oryza nivara	Corylus avellana	28.07	53.81	87.04	247	forward
CNT30547574	Oryza nivara	Ipomoea triloba	27.5	68.17	86.36	242	forward
CNT30512729	Oryza nivara	Juglans regia	52.5	44.9	84.63	462	forward
CNT30373394	Oryza nivara	Arabidopsis thaliana	28.52	44.66	84.86	251	forward
CNT30276060	Oryza nivara	Chenopodium quinoa	27.5	38.17	86.36	242	forward
CNT30379936	Oryza nivara	Manihot esculenta	28.64	75.45	85.71	252	forward
CNT30405823	Oryza nivara	Beta vulgaris	26.93	52.67	85.65	237	forward
CNT30488117	Oryza nivara	Olea europaea	27.84	50.2	86.12	245	forward
CNT30711584	Oryza nivara	Glycine max	67.73	84.66	82.38	596	forward
CNT3045373	Oryza nivara	Prunus dulcis	25	28.06	85	220	forward
CNT30191304	Oryza nivara	Secale cereale	57.27	38.74	91.27	504	forward
CNT30300473	Oryza nivara	Triticum aestivum	42.84	38.95	89.39	377	forward
CNT30224354	Oryza nivara	Hordeum vulgare	45.45	77.07	89.5	400	forward
CNT30395070	Oryza nivara	Triticum turgidum	57.27	65.88	89.88	504	forward
CNT30561656	Oryza nivara	Actinidia chinensis	55.45	34.86	84.63	488	forward
CNT3085191	Oryza nivara	Vigna radiata	25.45	31.24	81.7	224	forward
CNT30510505	Oryza nivara	Solanum lycopersicum	33.52	27.16	89.83	295	forward
CNT30552635	Oryza nivara	Oryza glaberrima	100	84.78	99.89	880	forward
CNT30143941	Oryza nivara	Medicago truncatula	27.5	54.02	83.47	242	forward
CNT30440797	Oryza nivara	Aegilops tauschii	71.25	86.13	87.72	627	forward
CNT30313757	Oryza nivara	Camelina sativa	29.66	29.76	84.29	261	forward
CNT3059659	Oryza nivara	Arabidopsis lyrata	24.89	50.46	82.19	219	forward
CNT30612508	Oryza nivara	Arabis alpina	29.55	10.24	86.15	260	forward
CNT30135610	Oryza nivara	Lolium perenne	44.09	45.86	89.18	388	forward
CNT3014085	Oryza nivara	Zea mays	63.41	91.48	88.17	558	forward
CNT30605685	Oryza nivara	Gossypium raimondii	38.75	44.63	87.39	341	forward
CNT30683923	Oryza nivara	Triticum urartu	57.27	55.08	89.29	504	forward
CNT30722731	Oryza nivara	Triticum spelta	25.57	44.03	84.89	225	forward
CNT30345702	Oryza nivara	Eragrostis tef	23.52	25.62	88.41	207	forward
CNT30361520	Oryza nivara	Sorghum bicolor	28.86	37.13	88.19	254	forward
CNT30596064	Oryza nivara	Oryza meridionalis	55.45	95.31	99.8	488	forward
CNT30359537	Oryza nivara	Lactuca sativa	22.39	29.89	82.23	197	forward
CNT30369654	Oryza nivara	Oryza glumipatula	52.39	52.39	99.78	461	forward
CNT30154011	Oryza nivara	Prunus persica	12.39	38.79	83.49	109	forward
CNT30107537	Oryza nivara	Oryza longistaminata	82.61	79.11	99.31	727	forward
CNT30332479	Oryza nivara	Dioscorea rotundata	11.48	35.69	86.14	101	forward
CNT30149525	Oryza nivara	Brachypodium distachyon	12.95	37.75	86.84	114	forward
CNT30100253	Oryza nivara	Oryza rufipogon	100	79.85	100	880	forward
CNT30575129	Oryza nivara	Oryza barthii	84.2	91.03	99.87	741	forward
CNT30497701	Oryza nivara	Digitaria exilis	36.36	98.46	91.56	320	forward
CNT30604019	Oryza nivara	Oryza punctata	37.39	97.34	90.88	329	forward
CNT3050899	Oryza nivara	Cucumis sativus	15	52.38	82.58	132	forward

Expression of CNT30116094

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSQWSNTHWGKAWPDVAALSWLENPKDSMTGR*

>peptide 2 (58 aa)
MLGPVVSGPKHQIFFARSLSQPNSSDRILERTLGSSRGPIRPSSMASANPSSKGRASM*

>peptide 3 (57 aa)
MKYDNESSSLSSRPTRTCKGNGTTHAAAKNLELVLEIGEGSHLLLETLPLADILHQG*

Sequence

>CNT30116094
ATAGGATTGTTGATGTGAAACACATGCATTCGACAAAAGGGAAATGAAATACGACAACGAAAGCAGTTCTCTTAGCAGTAGACCAACTAGAACATGTAAG
GGTAACGGCACAACACATGCGGCGGCCAAAAATTTAGAGCTTGTCCTCGAAATCGGAGAGGGGAGTCATCTGCTCCTTGAGACCCTTCCTCTTGCGGATA
TCCTGCACCAGGGTTGAAGCCTGCGAGCCAGCTTCAAGAGGATCAGAGGTCATCATGTCCCAATGGTCGAACACACACTGGGGGAAGGCCTGGCCAGATG
TCGCAGCCCTAAGCTGGCTTGAGAACCCAAAGGACTCGATGACAGGGAGGTAAGCCTTGATGTTGTACAGAGGGGTACCAGGTAGACGGGCTCAAGAAGC
CTGGGCTTTGCTGTGAGCTGAGAAGCATAGATGACCCTCCTGGCCGTGGGAATGACCTGGCCACCACCTCTGTGAATAGCATCAGCATGGAGAACAACAT
CGCACACCTCAAAGCAGATACCACGCATGTTCTCCTCAGCCAGAGCACCCTCCTTTGATGCCCACTGGAAACCAGCCACAACGGAATCCTTGATTTCATT
CAGATACTGAACTCCCTTACACATATCAACCACCATGTTGGGGCCAGTTGTCTCAGGTCCAAAACACCAAATCTTCTTTGCAAGATCCTTGTCCCAGCCG
AACTCCTCAGACAGGATCTTGGAGCGCACCTTGGGATCATCACGTGGGCCAATACGACCGTCATCAATGGCCTCAGCCAATCCCTCCTCCAAGGGGCGAG
CTTCCATGTAGAGACGGTTGTGCTTGTTCGGGGACTTGCTCATAACAGTACGGCACGACTTCTCAAGGACAGTCTCACGG