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Detailed information on CNT30116079

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30693471	Oryza nivara	Oryza sativa	16.15	47.15	92.36	157	forward
CNT30555550	Oryza nivara	Oryza glaberrima	76.85	32.69	95.72	747	reverse complement
CNT30108684	Oryza nivara	Oryza longistaminata	60.08	33.89	96.75	584	forward
CNT30578362	Oryza nivara	Oryza barthii	59.98	20.54	97.08	583	forward

Expression of CNT30116079

Peptides detected in this lncRNA

>peptide 1 (46 aa)
AQGGNNPIQERWDGIPAQGSPGGSYGREDLSPTGKLYNQPPFAYRR*

>peptide 2 (90 aa)
MSSELSMFMLLCMSSDLYIFRSPVYILRYFIIAYYYRWQRCLILFFYWISFSDMPCPALSANMQYQFYALDMAYIPPGCTHLHFYCRLIG*

>peptide 3 (30 aa)
RHREATIQYRRDGMGSQLKGALAAATVGRT*

>peptide 4 (37 aa)
GTGRQQSNTGEMGWDPSSREPWRQLRSGGPKPYRQAL*

Sequence

>CNT30116079
AGGCACAGGGAGGCAACAATCCAATACAGGAGAGATGGGATGGGATCCCAGCTCAAGGGAGCCCTGGCGGCAGCTACGGTCGGGAGGACCTAAGCCCTAC
AGGCAAGCTCTATAATCAACCCCCTTTTGCTTACCGGCGATAAGTCAACCAACTTCCAGTGATGCAGTCAATAGTTTCTGATCAGCTTGGAGTGGTCCAT
GCCATGTTGCTGTGATAATGCTACAGGTTAATCCTCCTGGCTCTCTGTACTGAAACAATTTCTCCGGATCTCTTTCCCTTTTGTTTTGGACCTTATACAA
CCTGCTGTTGGCTAATAATGACATTCATGAATAATAGATCATGTTAAAGCTGTTTGCATGGTCTGCTGTTGTCAAATAGTTTTATGCAGTCACAACTCTT
ATTAAATGATCAGGTTGACTTCAAGCATTGGGCTAAAAACTAAGATTATGTAAGTTAAATAACATATATGCCGTCATCTTCAATTTAAGTGATATTGTGT
CAATCTTCTGATCAACTGTTTACATCTTCGGATTATATAGATTCATGTCACCTGTGTATGTCTTCGGAATTATCTATGTTTATGTTACTGTGTATGTCTT
CAGATTTATATATATTTAGGTCACCTGTGTATATCTTGAGATATTTCATAATTGCATATTATTACAGATGGCAAAGATGTTTAATTCTATTTTTTTATTG
GATATCCTTCAGCGATATGCCCTGCCCGGCCTTGTCAGCTAATATGCAATATCAGTTTTATGCCCTTGACATGGCATACATTCCTCCAGGCTGCACTCAC
TTACACTTTTACTGTAGATTGATAGGTTAATGTTCCATTGTCAAGGTGAACCAATCAGCTAATGATGGTTCATATAGTTATAATTTGAGTGCAACTATGT
ATCCACTATGATGTAGAATTGTGGGTATTTATAGATGCAATTTAAAAGGTATGCCACTTAGGAATCGACACT