Detailed information on CNT30116072


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6EU94|PIP11_ORYSJ, E-value = 3e-68

BLAST vs NONCODE:
NONGMAT001758, E-value = 4e-08

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670956Oryza nivaraSetaria viridis37.1527.3594.1305forward
CNT30519732Oryza nivaraSetaria italica22.965.5194.15188forward
CNT30316259Oryza nivaraCorylus avellana15.3539.584.13126forward
CNT30728342Oryza nivaraCorchorus capsularis17.0521.2181.43140forward
CNT30340874Oryza nivaraEragrostis tef8.0424.4487.8866reverse complement
CNT30366304Oryza nivaraSorghum bicolor37.1561.4991.15305forward
CNT30595794Oryza nivaraOryza meridionalis23.5188.1399.48193forward
CNT30325169Oryza nivaraAsparagus officinalis26.1981.1386.05215forward
CNT30112244Oryza nivaraFicus carica22.4127.8884.24184forward

Expression of CNT30116072

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MVIPGMVLVVDDGSAKIMPPKDQAMPWMPTVAHLEEDLETPMTVRMVM*

>peptide 2 (31 aa)
MMAAPRSCLRRTRRCPGCRRWRTWRRTWRPP*

Sequence

>CNT30116072
TGTCTTCTACTCTTTTCTTGAGCAAAGGCTAGTAAGCTGGTAAGCTACTAAGTAAACTTTAGCAAGAGCATGCTGCTACATTTGGTTATAGTGACATGTT
TATCATCTTAGACCTACCCATACAAAGAGAAAAATATAACCAAAAAAAGTATCGATTATCAATGATGTGCTGACTAATATCTGATAATGTAAGAGGATCC
AATTGCTGAGAACATTTGATTATTTATACTGACATGTTTATCAGCTTAGACCTCAATTTGCCAACAAAAAATGTATCGATTATCAGTAATGTGTTGACTA
ATATCTGATAATGTAAGAGGAACCAATTGCTGAGAACGGCGAGTAGGTAAAAAGAGAAGAAAGGTTGCTCACATGGTCATTCCAGGCATGGTCCTTGTTG
TAGATGATGGCAGCGCCAAGATCATGCCTCCGAAGGACCAGGCGATGCCCTGGATGCCGACGGTGGCGCACTTGGAGGAGGACTTGGAGACCCCCATGAC
GGTGAGGATGGTGATGTAGAGGAAGAGGAAGGTGGCGACGAACTCGGCGATCCCGGCCCGGTAGAAAGACCACGACTTGAGCTCCCCTGGCTCGAACAGC
GGCGCCGGCGGCGGCTCCTTGTAGTCCTTGTCGTCCCCGGCGCCCTGCGCCGCCGTCCCTATCGGCTGCCTCTCCGAGTACCTGTTCGCCCCCAGCCGCA
CGTCCTCCTCCTTCCCCTCCATTGTCGCCTCTCCTCTGCAATGCGTGTGAGTGGAGACTGTGTGAGTGAGCTAGATGGTGGAGGTGAGAGAGAGGAGTAG
GGTGTTATAAAGGCAGAGTAC