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Detailed information on CNT30116064

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692282	Oryza nivara	Oryza sativa	93.43	88.81	100	611	forward
CNT30595942	Oryza nivara	Oryza meridionalis	95.57	93.56	97.6	625	forward
CNT30369931	Oryza nivara	Oryza glumipatula	94.04	96.7	100	615	forward
CNT30100647	Oryza nivara	Oryza rufipogon	100	48.62	99.39	654	reverse complement

Expression of CNT30116064

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MRGCEGRSRRRLRACVRSYRIYKAYRYGRRRRSIVRI*

>peptide 2 (51 aa)
THVQCSTLISIASGKASSSSRLPPCSSFHCLRPLQWRTRRPHPRMTSPVIA*

Sequence

>CNT30116064
GTACCCATGTACAGTGTTCCACACTGATCAGCATTGCCTCCGGAAAGGCCTCTTCTTCTAGTCGTCTCCCTCCCTGCTCCTCCTTCCATTGCCTCCGGCC
TCTCCAATGGCGAACCCGGCGGCCGCACCCACGAATGACTAGCCCTGTCATTGCCTAGTCTCGGCCAATGTAGGTGTAAGAGGGTGCGGCCGCCGCCGCC
GCCGCCACCAAAGGCAGACAGGATGGAGCCAGGCGTTACTTGTAGTTGTACTACTGTCTACTACCAACGATGAGAGGATGCGAAGGGAGATCGAGAAGAA
GGCTACGTGCGTGTGTGCGTTCGTACCGTATATACAAGGCGTATAGGTACGGCCGGAGGCGGCGGAGTATTGTACGGATCTAAAAGGTTCTTTGCTTGCC
ACCGCTCTCCGGGTCATTGGTGATGTTTTCAGTTAATTTTCCTTTTCAGTAGTTTATATATTGTTGGGTGGAGGATATCTTTGAGCAAAGTCCTCTGAAT
TTTGAACCATTTTGCTAGTATTATTTTTGTTCCTTCTTCGAGTTTTGGTTTTACGGAGAGATTTTTATGCCCCTGACTCTTCTCGTGTAAGTTTGCGAGC
AGCGCTTGACTGCTGTTGTGGCTCGAGTAGTTTTAAGTCTATATATTGGGTTCT