Detailed information on CNT30116053


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 5e-102

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-91

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30253358Oryza nivaraAvena sativa665792.89464forward
CNT30460404Oryza nivaraSaccharum spontaneum66.4314.7691.43467forward
CNT30143320Oryza nivaraLolium perenne6669.8894.4464forward
CNT3067610Oryza nivaraLeersia perrieri66.4326.2589.72467forward
CNT30722378Oryza nivaraTriticum spelta60.7470.3592.04427forward
CNT30595768Oryza nivaraOryza meridionalis98.0150.1194.63689forward
CNT30107357Oryza nivaraOryza longistaminata98.0192.2498.55689forward
CNT30581037Oryza nivaraEchinochloa crusgalli6696.0790.73464forward
CNT30592842Oryza nivaraEragrostis curvula65.4356.5891.52460forward
CNT30603673Oryza nivaraOryza punctata98.8670.2791.37695forward

Expression of CNT30116053

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSKVMVFPVKVFTKICIPPRRRSTRWRVDSFWML*

>peptide 2 (47 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVNVFTKICICKK*

Sequence

>CNT30116053
ACAGGAATGAGATGCAAATGAGCAAATTGAGCACATATTTAGGTTCAAATCCAACTTATTCATAAAGCATACTGCTGTCCACAGGAAACTGTTTCATAAA
ACTAACATATCATACGGACTCGATGGTCCATTAAACCAGACACAAGTAGACATCAGCACCACAAATACTTGACGAACAGAGGCTCGGGACGACCAGGCAC
ATCGGCAGCTCCACCAAACTGGCTGATTACTGACCACCACGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGC
GTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGGTCTGGGGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTCACATTATCAATGGTGTC
GGAGCTCTCAACCTCCAAAGTGATGGTCTTCCCAGTCAAGGTCTTCACGAAGATCTGCATACCACCACGGAGACGAAGCACCAGGTGGAGGGTGGACTCC
TTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCTTGGA
TCTTAGCCTTGACATTATCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAGATCTGCATCTGCAAGAAATA
ATC