Detailed information on CNT30116043


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005878, E-value = 2e-134

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30577921Oryza nivaraOryza barthii64.0213.5296.12258forward

Expression of CNT30116043

Peptides detected in this lncRNA

>peptide 1 (61 aa)
RFRHLVRGKWRERLRRKFKFPVSTHALHLYSISNSNTYKCILIRSLAVCHLFIVRKAKAGN*

>peptide 2 (43 aa)
MRDNLITHKEFIAAVQEQLMGFINEEILDPKGEFYYDGNTIHRS

Sequence

>CNT30116043
ATAGGTTCCGTCATTTGGTCCGTGGCAAATGGAGAGAAAGACTTAGGCGGAAGTTCAAATTTCCTGTGAGTACACATGCTCTACATTTATATTCAATCTC
CAATTCAAATACATACAAGTGTATATTAATTAGATCTCTCGCCGTTTGTCATTTATTTATAGTGCGCAAAGCAAAAGCAGGGAACTAACTTGTGCGGCTA
TTACGTGTGCGAGTATTGCCACTGCCTTGCAGACCAAATCATCACCACAAGAGAGCTCGATTTTATTCGCATGAGGGATAACCTGATCACACACAAGGAA
TTTATCGCGGCGGTTCAAGAACAACTCATGGGATTCATCAACGAAGAAATCCTTGATCCCAAGGGTGAATTCTACTACGACGGAAATACAATTCATAGGT
CCT