Detailed information on CNT30116039


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694403Oryza nivaraOryza sativa67.0778.3699.23391forward
CNT30674299Oryza nivaraSetaria viridis9.7826.6496.4957forward
CNT30102355Oryza nivaraOryza rufipogon59.6958.7899.14348forward
CNT30576871Oryza nivaraOryza barthii49.9133.8498.97291forward
CNT30497096Oryza nivaraDigitaria exilis17.1525.9186100forward

Expression of CNT30116039

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MVLGMMMSPMLLCHGSERWWRRRRPAGGSCSTTAPAGSARPPRCSSSARSSPLPPPPLASPPPPPPPRTHQQEDEVGRR

>peptide 2 (32 aa)
NRVFGLRVHERACWYSCHQSISPNRRTIPDRV*

>peptide 3 (34 aa)
MDGFTREHPLLKLYITRPTSSCLPADHCVRTRAQ*

Sequence

>CNT30116039
GTAATCGAGTTTTCGGCTTGAGAGTACATGAACGTGCGTGCTGGTACTCTTGTCATCAATCAATATCACCAAATCGACGTACCATACCAGATCGAGTTTA
ACTAAGACCAGTTTGATTTCGTGTTTGATACAAAAATTAAGATGGACGGATTCACAAGAGAGCACCCTCTACTTAAGCTTTACATTACAAGGCCAACCAG
CAGCTGCCTGCCGGCCGACCACTGCGTGCGCACGCGCGCGCAATAATCAACCAATCACACACAGTATGCACGCACATAAAAACCCCCCATAGCCTTCACG
TACGCCCGGACGCACGCACCGGTTCGTGCCAAACTCAAGGGTAGATGGTTCTCGGGATGATGATGTCGCCGATGTTGTTGTGCCACGGGTCCGAGAGGTG
GTGGCGTAGGCGCAGACCGGCAGGCGGCTCCTGTTCGACGACGGCGCCAGCAGGCTCGGCACGCCCACCGCGCTGCAGCTCCTCAGCCCGCTCGTCGCCA
TTGCCGCCGCCGCCGCTAGCTTCTCCTCCTCCTCCTCCTCCTCCTCGAACACACCAGCAAGAAGACGAAGTAGGAAGAAGAGG