CANTATAdb - search

Detailed information on CNT30116035

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002896, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30596524	Oryza nivara	Oryza meridionalis	36.56	54.06	91.5	306	forward

Expression of CNT30116035

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MHGSYSCCSGDGSSCGSGSICSSSSNINMSSSNICSSTCEFSCVLYMC*

Sequence

>CNT30116035
CCTCCACCGAATAAACCATGCTTAGGTGTCAAACAGGGAGACCACTAGTAAAACCTTAGTAGGTGAGTCACCTATTAGTCAACCATGTCCATGTGACAAA
AACCATATCAGTGTGAACCCCATCCTGACCGAGCCTCGTTTTCCTCGTAGAGACCAAAACCAGTTAGCAAGAAGAACCACCATAACCAGAGAGTGGAGAA
GAAAAGAAAAATACAAGAGGGCAAACTCACCCAACATTAGGTGGAGCAGGGGCTCCAGCTCCATTAGGAGCAGGTACCCCAGCTCAAGGAGGAGACGCTG
ATTCAGTAGAATCAACCAACCAATAGAAGCTGCAGTAGAAAAAGAGGAGTTCAACCATATATTTTCACAACTACTGAATAAGCAACAAAGAGAAGTTCGA
GTTCCCGAGGAATCATTCATTTCGACTGAATCTGAGGGTATTCGTGGTGTTTTCTATCCAGATGTTGAATCATTAGAATCTGTTGAACAAGAATATAAGT
GAAGGAACTCACGTTATGGATGACAACCAGGAAGGACTCTACGATGATGCTGAGATTGACTATGATAATTAGTATATAATATGCATGGTTCATATAGTTG
CTGTAGTGGTGATGGTAGTAGCTGTGGCAGCGGTAGTATTTGTAGTAGTAGCAGTAACATTAATATGAGTAGTAGTAATATCTGTAGCAGCACTTGTGAA
TTTTCTTGTGTGCTATATATGTGCTGAGTTTTTGGGGTTTGTATATTATTTTGCTGTATCTATGGTACTGTAATAACCGGAACCAATGCGATGTTTCTGC
TATGCTACTCTGATGTGTATATCTCTGAGTAAACGGT