Detailed information on CNT30116026


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691498Oryza nivaraOryza sativa38.02100100200forward
CNT30671080Oryza nivaraSetaria viridis22.6233.4391.6119forward
CNT30523938Oryza nivaraSetaria italica21.121.4784.68111forward
CNT30708652Oryza nivaraGlycine max11.9820.3288.8963forward
CNT30225308Oryza nivaraHordeum vulgare36.6967.4887.05193forward
CNT30396950Oryza nivaraTriticum turgidum37.2683.7685.71196forward
CNT30680513Oryza nivaraTriticum urartu40.6882.9585.51214forward
CNT30364747Oryza nivaraSorghum bicolor21.6712.7785.96114forward
CNT30619906Oryza nivaraCajanus cajan11.9828.6490.4863forward
CNT30595700Oryza nivaraOryza meridionalis40.6810097.66214forward

Expression of CNT30116026

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MVMWPPEMLAATETPTNRASAWAIAIATRPAGSRAPPLVNCPTQTKPSVGQK*

>peptide 2 (30 aa)
MAMVCVLTLPWVTNLRRRQAMEAPSSWAIQ*

>peptide 3 (48 aa)
MGDRDRHKAGRVEGATIGQLPYTNQAVGRSEMKHTTVHIKPENALSSP*

>peptide 4 (30 aa)
MRASPFLIYIFFPYYSDKCGEVSTLERELGD

Sequence

>CNT30116026
CTTTAATCTATGGCGATGGTGTGCGTGCTGACCTTGCCGTGGGTGACAAACTTGAGGAGGAGGCAGGCGATGGAGGCGCCTAGCAGCTGGGCGATCCAGT
AGAAGAGTCCGGTGAGGATGGTGATGTGGCCGCCGGAGATGTTGGCGGCGACGGAAACGCCCACGAACAGGGCGAGTGCATGGGCGATCGCGATCGCCAC
AAGGCCGGCCGGGTCGAGGGCGCCACCATTGGTCAATTGCCCTACACAAACCAAGCCGTCGGTAGGTCAGAAATGAAACATACTACTGTACATATCAAAC
CGGAAAATGCGTTGAGCTCACCATAGGCAATGGCGGATCCGACGCCGGCGAAGACGAAGAGGAGGGTGGCGATGAACTCCGCCACGTAGGCCTTCACGGA
CGTGGCGCTGAAGGAGTCACCCAAGCTTCCGAATGCGAGCTTCACCATTTTTAATCTATATTTTTTTTCCTTATTACTCTGATAAGTGTGGAGAGGTCTC
TACGCTTGAGAGAGAGCTTGGCGATT