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Detailed information on CNT30116024


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENA2|NU1C_ORYNI, E-value = 1e-97

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694441Oryza nivaraOryza sativa31.2551.6685140reverse complement
CNT30671235Oryza nivaraSetaria viridis27.6832.1295.16124forward
CNT30531354Oryza nivaraEucalyptus grandis70.5411.8486.39316forward
CNT30317759Oryza nivaraCorylus avellana90.8519.9685.75407forward
CNT30518402Oryza nivaraJuglans regia47.3255.3586.79212forward
CNT30615574Oryza nivaraSesamum indicum88.8426.7386.68398forward
CNT3020678Oryza nivaraCitrullus lanatus26.3430.5786.44118forward
CNT30406240Oryza nivaraBeta vulgaris56.798.0787.4254forward
CNT30201817Oryza nivaraPisum sativum68.975087.7309forward
CNT30712407Oryza nivaraGlycine max90.1832.5884.9404forward
CNT30569544Oryza nivaraActinidia chinensis93.5311.3487.11419forward
CNT30237694Oryza nivaraBrassica oleracea79.2432.4286.48355forward
CNT30262672Oryza nivaraBrassica rapa53.573.3586.67240forward
CNT30608772Oryza nivaraGossypium raimondii62.589.1788.21280forward
CNT30215974Oryza nivaraHelianthus annuus61.3837.5786.91275forward
CNT30689544Oryza nivaraTriticum urartu62.724.594.31281forward
CNT30596717Oryza nivaraOryza meridionalis89.0642.998.5399forward
CNT30360555Oryza nivaraLactuca sativa93.5338.2688.78419forward
CNT30151942Oryza nivaraPrunus persica68.9713.1786.08309forward
CNT3057989Oryza nivaraAmborella trichopoda66.2956.5787.21297forward
CNT3035415Oryza nivaraCucumis melo96.6564.8285.91433forward
CNT30148081Oryza nivaraBrachypodium distachyon98.2143.4495.45440forward
CNT30723989Oryza nivaraLupinus angustifolius57.3718.4485.21257forward

Expression of CNT30116024

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MAIHKKTPILRSAKTKRYPKGITKKLNKIDMTAIDGPMLNKGISPRDG

Sequence

>CNT30116024
TTCCTCCGCTTCTGGTAAATCAAAGGGTAATCTTTCACATTCCGCCAAAGAAGAAATTAGAAAAACCAGAAAACCTATAGGCTGACGCCAAAGATTCCAT
CCAAAAAAACCATATTTTGACTGTGCTTCAACTATATCAACTGTACTTGAACTGTTGGATAATCATAATATTGCTAGTACACAAAAAGTTAATGGGATTT
CATAACTAATAGATTGAGCGGCAGCTCGTAGACCACCTAAAAAAGAATATTTATTATTTGAGCTATATCCTGCCATAAGAAGACCAATAGGAGCAATACT
TGAAATGGCAATCCATAAAAAAACACCAATACTAAGATCCGCTAAAACAAAGCGATATCCCAAAGGAATAACTAAAAAACTTAATAAAATTGATATGACT
GCTATAGACGGTCCAATGCTAAATAAGGGAATATCCCCTCGGGATGGC