Detailed information on CNT30116023


BLAST search results

BLAST vs Swiss-Prot:
sp|Q67YI9|EPN2_ARATH, E-value = 2e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520016Oryza nivaraSetaria italica17.2723.5889.26149forward
CNT30301583Oryza nivaraTriticum aestivum22.627.0884.62195forward
CNT30552530Oryza nivaraOryza glaberrima56.0875.3998.76484forward
CNT30666600Oryza nivaraTriticum dicoccoides25.4926.1384.09220forward
CNT30460493Oryza nivaraSaccharum spontaneum25.4925.3785.91220forward
CNT30139889Oryza nivaraLolium perenne25.4923.9985.91220forward
CNT30575135Oryza nivaraOryza barthii45.1954.798.97390forward

Expression of CNT30116023

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PEMSRLTKPRLNVSAQTVDLDSNFFTGSD*

>peptide 2 (35 aa)
MERTSRCSICLRNCRSFFMNSLERRRIPKRISCIKG

>peptide 3 (34 aa)
MRKCGGSLRIGCLGGDIRWDCLFRVHRWVCRWYL*

>peptide 4 (85 aa)
MLVNEEMWRQPEDRVPGRRHKMGLPVQGAQMGLQVVPLNVMRWAQKYLAARVQHSIQKRGRQECLQNQSLLLKQAGKDLHLQQVQ*

>peptide 5 (76 aa)
MNLIVMESSHQKALNSALQEAEMPLEKLMLPVKLPWQFVGGRLAERAVDLLELQIEKPVKGCRMVLHSVKEPQTCH*

Sequence

>CNT30116023
GTCCAGAGATGTCCAGATTGACTAAACCTCGGCTCAATGTATCAGCCCAAACTGTAGATTTGGACTCAAATTTCTTCACTGGCTCAGACTGACTAACTTG
CAAGGCTGAAAGGATTGTTTCAGGGGGAGCTGATGAACTTGATTGTAATGGAAAGTTCACACCAGAAGGCATTGAATTCGGCACTGCAAGAGGCTGAGAT
GCCCCTCGAGAAATTGATGTTGCCTGTGAAGCTGCCATGGCAGTTTGTGGGGGGAAGGTTGGCTGAGAGGGCTGTAGATTTGTTGGAGCTGCAAATTGAG
AAGCCTGTGAAGGGATGTAGGATGGTGCTCCATTCTGTGAAGGAGCCCCAGACATGCCATTAATGCCAGTCCCTGGAACTGGTTGCATAAAATAGTTTGA
TTGGCCTGATGGTACAGGTTGAGGCATTTGTAAAGGAGCAAATGGTGTGGCAACATTCTGAGGGATTGTAGATGGATTAGTGGCTGCAGGATGAGATGCT
TGTGAATGAGGAAATGTGGAGGCAGCCTGAGGATAGGGTGCCTGGGAGGAGACATAAGATGGGACTGCCTGTTCAGGGTGCACAGATGGGTTTGCAGGTG
GTACCTCTGAATGTGATGAGGTGGGCACAAAAATATCTTGCTGCCCGGGTGCAGCATTCGATCCAAAAGAGAGGTCGCCAAGAGTGTCTCCAAAACCAAA
GCTTGCTGCTGAAGCAGGCTGGAAAGGATTTGCATCTGCAGCAGGTTCAGTAGCATGGAAAGAACCAGCAGGTGCAGCATTTGTCTGAGAAACTGCAGGA
GTTTCTTCATGAACAGCCTTGAAAGGCGTAGGATCCCCAAAAGGATTAGTTGCATCAAAGGCC