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Detailed information on CNT30116012


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002741, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691190Oryza nivaraOryza sativa72.2359.5191.75679reverse complement
CNT30552478Oryza nivaraOryza glaberrima100.4310.2894.39944forward
CNT30110571Oryza nivaraOryza longistaminata98.414.7191.14925forward
CNT30100171Oryza nivaraOryza rufipogon21.734.492.16204forward

Expression of CNT30116012

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MTNYHLENKYFQPLRCNPKFCSIYRYFPNGLVVLKLKFIECEINKVRS*

>peptide 2 (29 aa)
MAQCANFVPLYGRMQDLYIAATHKHGLGT*

>peptide 3 (56 aa)
MHPCLFEQKKSYCYTCHLASRFLLRPKYMDANNETVLMHPSMTRQIFLEHLGLDCI*

Sequence

>CNT30116012
GCAAGCCACACAAGTTTAAATGGAAATATCATACTAGGAGTAAGTCATAAGCAAACTATGTAATTTAAGTTGAGATGGCTCAGTGTGCAAATTTTGTGCC
CCTTTACGGTCGGATGCAAGATTTGTACATTGCAGCAACTCACAAACATGGTTTGGGAACTTGACTTGTAGGTTTTGGAAACTTCTCTAAGATGATCCAT
TTGTTTTAAAATTGCCATCTTTTTCCAGGATAAGAAAAGCCTTGTGATGAGTCTGAGTTAAGAAAATGTTTAATTTTGTCAGCTTGTCCTAGCCTGTAGC
CTATAAAGAGTTGCAACCCTTCCCATGCCCATGAAAAACCTTGAGTAGGATCAATAGTCTCAAGAACAATTTTCCTGAAAGGATTGTTCTATGGCATGTA
TGCAATACAAAATATCTTCATAATCATTGTATCATTTCATACATGGATCGCATCATTTCGTTCATCATGATATCATAGCATGCATCCTTGTCTTTTTGAG
CAAAAGAAAAGTTATTGCTATACATGCCATCTAGCATCCCGTTTTCTACTACGACCCAAGTATATGGATGCAAATAATGAGACCGTCCTGATGCATCCAA
GTATGACTCGACAAATATTCCTAGAACACCTTGGATTAGATTGCATATGACTAATTATCACTTGGAGAACAAATATTTCCAACCCCTAAGATGTAACCCA
AAGTTTTGTTCGATTTATCGATATTTTCCCAATGGCCTTGTTGTCTTAAAACTTAAATTTATCGAATGTGAGATCAACAAGGTTAGATCATGACCGTAGA
CCATGAAGACTTGAACCTTATTACATCCTAACGGTTAGAGATACTAAATCTGGTATTCTTGAAAAGTTTTATTAACATTTAAAATCAATAATGTTGTATT
GTTATTAGAAAACAACATAGCCGTGACACCTTAGATCATA