Detailed information on CNT30116007


BLAST search results

BLAST vs Swiss-Prot:
sp|P05993|PAPA5_CARPA, E-value = 7e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691218Oryza nivaraOryza sativa72.7166.2698.17493forward
CNT30519738Oryza nivaraSetaria italica26.5531.9787.78180forward
CNT30376514Oryza nivaraArabidopsis thaliana15.1934.9283.5103forward
CNT3070873Oryza nivaraQuercus suber20.819.6982.98141forward
CNT30393337Oryza nivaraTriticum turgidum14.947.8786.14101forward
CNT30588616Oryza nivaraMusa acuminata9.5926.6487.6965forward
CNT30509501Oryza nivaraSolanum lycopersicum15.0426.2982.35102forward
CNT30141683Oryza nivaraLolium perenne23.1632.8589.81157forward
CNT30685650Oryza nivaraTriticum urartu11.2131.9389.4776forward
CNT30364755Oryza nivaraSorghum bicolor33.7829.7485.59229forward
CNT30575136Oryza nivaraOryza barthii40.869.9799.64277forward

Expression of CNT30116007

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRRSQREEHRDQGACHRCTGTKHHQCMLAAI*

>peptide 2 (48 aa)
NHQLCTIHRMVGGLLIRIYSFEVWMADTVETIESTPHLLRTLEPLQIL*

Sequence

>CNT30116007
AGAATCACCAACTGTGCACCATCCACAGGATGGTCGGGGGACTACTGATCAGAATCTACTCCTTTGAGGTGTGGATGGCAGACACGGTGGAGACCATAGA
ATCCACGCCACATTTGTTGCGGACGTTGGAGCCCCTGCAGATCTTGTAGTACCCATGCTCTCCCCAGTTCTCGCCCCAGGAGTTCTTGATGATCCAGTAG
GCCTTATCCTTTAGGCGGATTGGAGCAAAACCAGATGCGCCGTAGCCAACGAGAAGAACACCGTGATCAAGGTGCCTGCCACAGATGTACGGGCACGAAA
CACCACCAATGTATGTTGGCAGCAATCTGATCCTCATCGACAGAGACAACACTGAAGTTCTGAACTGAAGTAACAATCTTCGACTTGTCAAATTTGCAGG
TGCCATCCCTCCCAGTGTAGGGGTAATCCTTCTCACTCTCAAGGCCACCGGATTTCAAAAGATAGCTGAAGGCGTTAGTCATCAATCCACCATTGCATCC
AGCATCACATGAATCAGGTTCTGATGAATCACACTGCAAAATTAGATAACAATGAAGCCCAGTAAGTTGAGATACCCCATTCAGTTGAAACAGGTAACAG
TAGAAAACAAATAACAACAGTACATATCCCACTGTCAAGTCAAAAAAAGTATTATAATACCAGGAAGGCTAAAAATTA