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Detailed information on CNT30115989


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002896, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691398Oryza nivaraOryza sativa74.5963.3399.43872forward
CNT30596529Oryza nivaraOryza meridionalis18.7310097.26219reverse complement
CNT30108832Oryza nivaraOryza longistaminata74.9467.0297.03876forward
CNT30101345Oryza nivaraOryza rufipogon39.4499.5795.66461forward

Expression of CNT30115989

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MHGSYSCCSGDGSSCGSGSICSSSSNINMSSSNICSSTCEFSCVLYMC*

Sequence

>CNT30115989
CAGTGTTGTTGCATACATCAAATGCATCTCATACATTATTCATCTAAAATAGAAATAGTGAAAATTAAATAAAAATGTTGGTGTGATCTGTGACCACACC
TAATTGCTTTAGGAGATTTCAAATATAAGATTTAGGCAAAAGAGAAAATTTAGAGTTGCTTGATGTCACATATTTTGCAACCAAACCATTTTGGGGCACA
AAATTTGTAACATTAGCCATCTCTTAGTACTTTCCAAAACTATTTATTTCTTAGGTAAACTCTGAGTTTTTGGGCAATTGAAAATCAGTCCCTAAATTCA
AAGTAATCTCCATATTTTTAAAGTCTATGGTACTATAATGCAAAAGTTACAAATATCATACTTTTCACTAGATTTTTATTTAATTGCAAATCTGTGAAAA
ATTATGCTGAGCCTCCACCGAATAAACCATGCTTAGGTGTCAAACAGGGAGACCACTAGTAAAACCTTAGTAGGTGAGTCACCTATTAGTCAACCATGTC
CATGTGACAAAAACCATATCAGTGTGAACCCCATCCTGACCGAGCCTCGTTTTCCTCGTAGAGACCAAAACCAGTTAGCAAGAAGAACCACCATAACCAG
AGAGTGGAGAAGAAAAGAAAAATACAAGAGGGCAAACTCACCCAACATTAGGTGGAGCAGGGGCTCCAGCTCCATTAGGAGCAGGTACCCCAGCTCAAGG
AGGAGACGCTGATTCAGTAGAATCAACCAACCAATAGAAGCTGCAGTAGAAAAAGAGGAGTTCAACCATATATTTTCACAACTACTGAATAAGCAACAAA
GAGAAGTTCGAGTTCCCGAGGAATCATTCATTTCGACTGAATCTGAGGGTATTCGTGGTGTTTTCTATCCAGGCAAGACTCTACGATGATGCTGAGATTG
ACTATGATAATTAGTATATAATATGCATGGTTCATATAGTTGCTGTAGTGGTGATGGTAGTAGCTGTGGCAGCGGTAGTATTTGTAGTAGTAGCAGTAAC
ATTAATATGAGTAGTAGTAATATCTGTAGCAGCACTTGTGAATTTTCTTGTGTGCTATATATGTGCTGAGTTTTTGGGGTTTGTATATTATTTTGCTGTA
TCTATGGTACTGTAATAACCGGAACCAATGCGATGTTTCTGCTATGCTACTCTGATGTGTATATCTCTG