Detailed information on CNT30115987


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674046Oryza nivaraSetaria viridis34.2113.1192.3178forward
CNT30442646Oryza nivaraAegilops tauschii30.265.8692.7569forward
CNT3010282Oryza nivaraZea mays28.5111.595.3865forward
CNT30344604Oryza nivaraEragrostis tef34.218.6293.5978forward
CNT30329127Oryza nivaraDioscorea rotundata21.0511.1491.6748forward
CNT30580567Oryza nivaraEchinochloa crusgalli33.7710.3193.5177forward
CNT30497331Oryza nivaraDigitaria exilis34.218.694.8778forward
CNT30551236Oryza nivaraOryza brachyantha33.777.7494.8177forward

Expression of CNT30115987

Peptides detected in this lncRNA

>peptide 1 (53 aa)
EIRIKNHTTASMAHRQWYTSDSLNRSKFSGTVARHAHRAAAPQPARRHCRRRR*

>peptide 2 (74 aa)
GDQNQEPYHSEHGPPAVVHLRLLEPLEILRHGGSARPPRCSSSARSSPLPPPPLASPPPPPPPRTHQQEDEVGRR

Sequence

>CNT30115987
CGGAGATCAGAATCAAGAACCATACCACAGCGAGCATGGCCCACCGGCAGTGGTACACCTCCGACTCCTTGAACCGCTCGAAATTCTCCGGCACGGTGGC
TCGGCACGCCCACCGCGCTGCAGCTCCTCAGCCCGCTCGTCGCCATTGCCGCCGCCGCCGCTAGCTTCTCCTCCTCCTCCTCCTCCTCCTCGAACACACC
AGCAAGAAGACGAAGTAGGAAGAAGAGG